PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_21187_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 731aa MW: 84361 Da PI: 8.7062

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_21187_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.9	4.5e-10	33	108	20	90
FAR1 20 kkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklk.vkkekdgkwevtkleleHnHela 90 + s + g+ + tf+C + gk+++++k ++k+ r++ +++++C +lk k+++d+kw+++ ++ eHnH+++ Neem_21187_f_2 33 SDSGDRGQKARITFCCERGGKHRNTRKIkkdeRQKQLRNTGTKKCECPFTLKgYKLDDDDKWRLKVVSGEHNHKIV 108 344567778999*******9988776443333333455666666666666234455*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-8	32	108	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-26	222	317	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence Send to blast
MVIEAKRQGL PFVVREVENT ETQEKVVIVI KRSDSGDRGQ KARITFCCER GGKHRNTRKI 60 KKDERQKQLR NTGTKKCECP FTLKGYKLDD DDKWRLKVVS GEHNHKIVEH CEGRSYAGRL 120 SKEETSLSIH MSKNMVSPKD ILATLKHKDA ENTSTVKQIY NMRHRYKVIE MASRSQMQQL 180 LSKLSEHKYI EWHESFDGTD IIKDLFWAHP VSIDLMRAFP YVLLMDCTCK TNRSNLPLLE 240 IIGVTSTNIT FAIAFAYLES EQDDNYSWAL ERLRSLMHDT VLPNVIISDG ESALMNAVER 300 VFPTTKHLLC RRHISMNLLT NCKKLFATND VWKKFRMSWD IMVLSSNEDE FVSHLDTLKQ 360 EFSSYPQAIE YVTNTWLNNY KERFVSAWTD KIMHLGILTA NRVGSSHSRL KKQLHSSQEI 420 FETSWLKIHS LLMLQRSDII TSFEKSLKAM PCKFKSMEFE ELQGFISIVA LHIVYSELKR 480 ANVIGVDASI CRCTIRRTHG LPCAHEIAEF KREGRPIPLE SMDIHWRKLD LAPVFKKQKV 540 KLSCESEFHR IAKHFNESDD DTKLLILKKL AEIVDPQTKS LLEPITKQET WDQPNSKVHA 600 SLHGDHPTCE LVLSRQEKNC SLDSTVAPVV STRPIAERKE EDLRSEEKEH GNKRSTFISS 660 LPVKLQPYIY YIKDVAADGN CGFRAIADLV GYGENGWKQQ SFTFLPLRSE PILARKEIAI 720 GFVNNNHFVE V

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence Send to blast

MVIEAKRQGL PFVVREVENT ETQEKVVIVI KRSDSGDRGQ KARITFCCER GGKHRNTRKI  60
KKDERQKQLR NTGTKKCECP FTLKGYKLDD DDKWRLKVVS GEHNHKIVEH CEGRSYAGRL  120
SKEETSLSIH MSKNMVSPKD ILATLKHKDA ENTSTVKQIY NMRHRYKVIE MASRSQMQQL  180
LSKLSEHKYI EWHESFDGTD IIKDLFWAHP VSIDLMRAFP YVLLMDCTCK TNRSNLPLLE  240
IIGVTSTNIT FAIAFAYLES EQDDNYSWAL ERLRSLMHDT VLPNVIISDG ESALMNAVER  300
VFPTTKHLLC RRHISMNLLT NCKKLFATND VWKKFRMSWD IMVLSSNEDE FVSHLDTLKQ  360
EFSSYPQAIE YVTNTWLNNY KERFVSAWTD KIMHLGILTA NRVGSSHSRL KKQLHSSQEI  420
FETSWLKIHS LLMLQRSDII TSFEKSLKAM PCKFKSMEFE ELQGFISIVA LHIVYSELKR  480
ANVIGVDASI CRCTIRRTHG LPCAHEIAEF KREGRPIPLE SMDIHWRKLD LAPVFKKQKV  540
KLSCESEFHR IAKHFNESDD DTKLLILKKL AEIVDPQTKS LLEPITKQET WDQPNSKVHA  600
SLHGDHPTCE LVLSRQEKNC SLDSTVAPVV STRPIAERKE EDLRSEEKEH GNKRSTFISS  660
LPVKLQPYIY YIKDVAADGN CGFRAIADLV GYGENGWKQQ SFTFLPLRSE PILARKEIAI  720
GFVNNNHFVE V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024038296.1	0.0	PKS-NRPS hybrid synthetase CHGG_01239-like
TrEMBL	A0A2R6QP95	0.0	A0A2R6QP95_ACTCH; PKS-NRPS hybrid synthetase
STRING	XP_006487130.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-14	FAR1-related sequence 11