PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_21061_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 505aa MW: 58527.4 Da PI: 9.8053

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_21061_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.6	3.2e-26	98	206	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkek.dgkwe 77 +fY+eYAk vGF + +++s++s+ +g++++++fvC+++g+++e+++ +++ r +r+ ++t+Cka+++vk+++ dg+w Neem_21061_f_1 98 SFYKEYAKLVGFATIIKASRRSRISGKFIDAKFVCTRYGSKRESSTVeaaeaantdsmtsipikRKRGRINRSWSKTDCKACMHVKRRQeDGRWI 192 5*************************************999988799*********99899999***************9* PP FAR1 78 vtkleleHnHelap 91 + ++ +eHnHe++p Neem_21061_f_1 193 IRNFIKEHNHEIFP 206 *********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-24	98	206	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-17	257	311	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MGIDIEQPSR EYYKEDNRSN VNVNMGNADD GGSNRGGFIV DCSNSSGNNK ENTRPNISGI 60 GVDGRQKVHA GDEINLNSLK TIEPHEGMEF ESKEEAFSFY KEYAKLVGFA TIIKASRRSR 120 ISGKFIDAKF VCTRYGSKRE SSTVEAAEAA NTDSMTSIPI KRKRGRINRS WSKTDCKACM 180 HVKRRQEDGR WIIRNFIKEH NHEIFPDQAY YFRGHRNLDL GNSNVDALHA IRERTKRMFV 240 TMSRKSGGYK KLDSQKDETK STYTWLLRSW LRAMGGHAPS VILSDQDNAL KEAIAEVFPG 300 SRHCFCLWHI FSKIPEKLSY VTRQHENFMT KFNKCIFKSF TSEQFEKRWS KIVDRFNLRH 360 DVWFQSLYED RERWIPTFMK GIFLAGMSSI QRSESINSFF DKYMQRKTTL KEFFDQYKAI 420 LKEKCEEEAR ADFESRHKQP GLKSPSPFGK QMATLYTHAI FKKFQVEVLG VVACHPRKES 480 EDGPTKTFKH TITVYIDTLD KGCKE

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MGIDIEQPSR EYYKEDNRSN VNVNMGNADD GGSNRGGFIV DCSNSSGNNK ENTRPNISGI  60
GVDGRQKVHA GDEINLNSLK TIEPHEGMEF ESKEEAFSFY KEYAKLVGFA TIIKASRRSR  120
ISGKFIDAKF VCTRYGSKRE SSTVEAAEAA NTDSMTSIPI KRKRGRINRS WSKTDCKACM  180
HVKRRQEDGR WIIRNFIKEH NHEIFPDQAY YFRGHRNLDL GNSNVDALHA IRERTKRMFV  240
TMSRKSGGYK KLDSQKDETK STYTWLLRSW LRAMGGHAPS VILSDQDNAL KEAIAEVFPG  300
SRHCFCLWHI FSKIPEKLSY VTRQHENFMT KFNKCIFKSF TSEQFEKRWS KIVDRFNLRH  360
DVWFQSLYED RERWIPTFMK GIFLAGMSSI QRSESINSFF DKYMQRKTTL KEFFDQYKAI  420
LKEKCEEEAR ADFESRHKQP GLKSPSPFGK QMATLYTHAI FKKFQVEVLG VVACHPRKES  480
EDGPTKTFKH TITVYIDTLD KGCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006448648.2	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Refseq	XP_024046841.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024046842.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024046843.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024046844.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024046845.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024046846.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024046847.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024046848.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_024046849.1	1e-149	protein FAR-RED IMPAIRED RESPONSE 1 isoform X3
Swissprot	Q5UBY2	1e-137	FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A438BXP3	1e-160	A0A438BXP3_VITVI; Protein FAR-RED impared response 1
STRING	XP_006468529.1	1e-147	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	1e-139	FAR1-related sequence 1