PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_20776_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

VOZ

Protein Properties

Length: 328aa MW: 35793.3 Da PI: 5.0534

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_20776_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	171.4	4.4e-53	209	303	1	95
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaflgpkcalwdc+rpaqg++w+qdycssfha+lal eg+pg+ pvlrp+gi+lkdgllfaal ak+qgk+vgipecegaat+kspwna+ Neem_20776_f_1 209 PPPSAFLGPKCALWDCPRPAQGMDWCQDYCSSFHAALALSEGPPGMGPVLRPGGIGLKDGLLFAALGAKAQGKDVGIPECEGAATSKSPWNAPGK 303 89******************************************************************************************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGKGSKTNCK SASHKLFKDK AKNRVDDLQG MFMDLQYARK ESRSVDVAVL EEQVHQMLRE 60 WKAELNEPSP ATSLQQEGSL ATFSSDIYRL LQLCEEEDDA TSKLAAPKPE PNDQILPARD 120 SAVFHEVGYG VNQGQQQHGF PLVDQCKNSP SGVHGTTMNN LEGSTLLDYN HFDLHQDFEQ 180 NFYTGFNVST FGGEDAMHQI SGYLPSICPP PSAFLGPKCA LWDCPRPAQG MDWCQDYCSS 240 FHAALALSEG PPGMGPVLRP GGIGLKDGLL FAALGAKAQG KDVGIPECEG AATSKSPWNA 300 PGKCILAALH IQYITRSCNF EVSMECSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467710.1	0.0	transcription factor VOZ1 isoform X1
Refseq	XP_006467711.1	0.0	transcription factor VOZ1 isoform X1
Swissprot	Q9SGQ0	1e-150	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A067GDH6	0.0	A0A067GDH6_CITSI; Uncharacterized protein
STRING	XP_006467710.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-153	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]