PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_20658_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 381aa MW: 42935.8 Da PI: 7.6462 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 63.4 | 3.8e-20 | 339 | 376 | 2 | 38 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkv 38 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v Neem_20658_f_1 339 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQV 376 8***************************99*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-21 | 323 | 376 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-18 | 331 | 376 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.312 | 333 | 376 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-13 | 338 | 381 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-17 | 339 | 376 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAKGSGLSID SDPIAGNLFL HQPTVLNSFP ENHQNHNNVN FRNTRFKFSS IMDGKISPTT 60 TPSTIQFPVC LNSSSHDQDR PVHQLDDEHK RTVVIDEMDF FTGKNHDHIK SNADNSNADH 120 KKESDRPIVL QLKVNTGLNL LTTNASSDQS MVDDGISTNM EDKRGKNEYA VIQAELDRVS 180 AENQRLRDML NQVTSNYNML QMHMMTLTQH QQNQKSKISD EQVEEKKGIM APRQFIDLGL 240 ATNNTTDTDE PSLSSSEERS RNHAGSPVHR NNSNEENTVI FDQDKKEFVK RDDSPDKSYG 300 ANKVPKFSSS SQKNVDQTEA TMRKARVSVR ARSEAPMIND GCQWRKYGQK MAKGNPCPRA 360 YYRCTMAAGC PVRKQVCLLS L |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006139 | 1e-40 | AP006139.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT02A16, TM0243, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447589.1 | 1e-157 | probable WRKY transcription factor 31 | ||||
Refseq | XP_006495237.1 | 1e-157 | probable WRKY transcription factor 31 | ||||
TrEMBL | A0A2H5PWP8 | 1e-158 | A0A2H5PWP8_CITUN; Uncharacterized protein | ||||
STRING | XP_006495237.1 | 1e-156 | (Citrus sinensis) | ||||
STRING | XP_006447589.1 | 1e-156 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22070.1 | 7e-69 | WRKY DNA-binding protein 31 |