 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_20633_f_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
| Family | ZF-HD | ||||||||
| Protein Properties | Length: 268aa MW: 28927 Da PI: 6.8826 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 107.1 | 9.9e-34 | 44 | 101 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
+ v YkeClkNhAaslGgha+DGCgEfmps++++ +++++kCaACgCHRnFHRr++
Neem_20633_f_1 44 MVVSYKECLKNHAASLGGHALDGCGEFMPSPTATsDDPTSFKCAACGCHRNFHRRDPY 101
5789***************************999788******************975 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD125774 | 5.0E-23 | 46 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Pfam | PF04770 | 4.5E-28 | 46 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 26.997 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 2.0E-30 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 268 aa Download sequence Send to blast |
MDLTNLHTTK NPDTETESPP KILPSNSFSF TNGSFFHQPP PLQMVVSYKE CLKNHAASLG 60 GHALDGCGEF MPSPTATSDD PTSFKCAACG CHRNFHRRDP YEPTASNTHF LAPPPAAAAT 120 FQRSSSPSTD PSTAPSPETN SPQQQPVTSP APCSYFSSAP HMLLALSTGY TGPSDDHHYP 180 HPRRTGFNQV VGTKSENPCA RKRSRTPPYP FQSSGGDEVR EPLCKEEIKN EVYSGAEGKD 240 AVFCGKAGLE DEQGGRKVNA GVLQRSWC |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006438687.1 | 4e-82 | zinc-finger homeodomain protein 11 | ||||
| Refseq | XP_006483155.1 | 4e-82 | zinc-finger homeodomain protein 11-like | ||||
| TrEMBL | A0A067GT80 | 8e-81 | A0A067GT80_CITSI; Uncharacterized protein | ||||
| TrEMBL | V4TF27 | 9e-81 | V4TF27_9ROSI; Uncharacterized protein | ||||
| STRING | XP_006483155.1 | 1e-81 | (Citrus sinensis) | ||||
| STRING | XP_006438687.1 | 1e-81 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM5166 | 25 | 49 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69600.1 | 3e-44 | zinc finger homeodomain 1 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|