PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2048_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 448aa MW: 50302.3 Da PI: 7.7939

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2048_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24	8.2e-08	274	316	8	50
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 r+ NReA r++R++Kka ++ Lee+vk+L N++L +l+ Neem_2048_f_2 274 RKSSGNREAVRKYREKKKAHTAYLEEEVKKLRLINQQLVRKLQ 316 77778*********************************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.4E-11	261	334	No hit	No description
SMART	SM00338	6.9E-7	265	334	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.0E-6	274	328	No hit	No description
Pfam	PF07716	2.0E-10	274	316	IPR004827	Basic-leucine zipper domain
CDD	cd14686	1.41E-10	279	325	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEVVFIFNIC CVVRTSLSIN GSVRCHAVSF SSFARKRSGF CKAPIRMENK PRTNRRSGIQ 60 ELALVPGPTT HSCLCLLVWA IYSEVRMMTG NGNGSRLFHY LLLILSGQEV INIMFWPPVC 120 TGVDLAFIFS SLKWIKTTGN YIRDMPIVSF WQRWQWHKCE IIIVIMVIES YPKIRLFVFV 180 VMKENMDDGE VELSDHVSFP NQDSSSNFQN SASGDSFLDE FLKNTRTCTH THTCNPPGPD 240 AAHTHTCYHT HTQVIASEED NHSNSKEHSS LKPRKSSGNR EAVRKYREKK KAHTAYLEEE 300 VKKLRLINQQ LVRKLQGQAF LEAEVTRLRS LLVDFKAKVE NELGAFPFQK QCKSTTNLKE 360 DDYGVQSNSG TIGLQCQRDL PCFHLQAGSS SHTSMDGSGK ILASRQGNCE PAIIDCQADT 420 HDIVSAEGQT LDAVEALVSS SSQAQLAE

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEVVFIFNIC CVVRTSLSIN GSVRCHAVSF SSFARKRSGF CKAPIRMENK PRTNRRSGIQ  60
ELALVPGPTT HSCLCLLVWA IYSEVRMMTG NGNGSRLFHY LLLILSGQEV INIMFWPPVC  120
TGVDLAFIFS SLKWIKTTGN YIRDMPIVSF WQRWQWHKCE IIIVIMVIES YPKIRLFVFV  180
VMKENMDDGE VELSDHVSFP NQDSSSNFQN SASGDSFLDE FLKNTRTCTH THTCNPPGPD  240
AAHTHTCYHT HTQVIASEED NHSNSKEHSS LKPRKSSGNR EAVRKYREKK KAHTAYLEEE  300
VKKLRLINQQ LVRKLQGQAF LEAEVTRLRS LLVDFKAKVE NELGAFPFQK QCKSTTNLKE  360
DDYGVQSNSG TIGLQCQRDL PCFHLQAGSS SHTSMDGSGK ILASRQGNCE PAIIDCQADT  420
HDIVSAEGQT LDAVEALVSS SSQAQLAE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438937.1	1e-126	basic leucine zipper 24
Refseq	XP_006438938.1	1e-126	basic leucine zipper 24
Refseq	XP_006482937.1	1e-126	basic leucine zipper 24
Refseq	XP_006482938.1	1e-126	basic leucine zipper 24
TrEMBL	A0A067GUJ0	1e-127	A0A067GUJ0_CITSI; Uncharacterized protein
STRING	XP_006482937.1	1e-126	(Citrus sinensis)
STRING	XP_006438937.1	1e-126	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	2e-32	bZIP family protein