PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20194_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 400aa    MW: 43851.8 Da    PI: 8.1365
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20194_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.17.2e-32281334255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt+ LH+rFv+ave LGG+e+AtPk++le+m+vk+Ltl+hvkSHLQ+YR+
  Neem_20194_f_1 281 PRMRWTSSLHARFVHAVELLGGHERATPKSVLEFMDVKDLTLAHVKSHLQMYRT 334
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-15278335IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-28279335IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-24281334IPR006447Myb domain, plants
PfamPF002498.6E-7282333IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSCERVFSSS TESSLNPIPD LSLQIRPPNS APSSICTSAA GNEGDYSTLN IWRKDDDNNF  60
DDLKSHSDSS VIACKEAAAD TQLYLANPKN TPAAALEAES PWRRSFGTVC NKQDQTRLRN  120
HHHHQLLHQC GNTSQISNLN HGISLLDVSG LKPIKGIPVY NNSRFPFPNN HGEITVLDPK  180
FRFYQTTTTY PSSSPCTSYC SPSSTASVLG SSDHHHCGSS SGGAYRIGTA PRFNGISAET  240
ITPQLQYSHY GMGLGSSELF DGKIRSRYMP KMPNKRNMRA PRMRWTSSLH ARFVHAVELL  300
GGHERATPKS VLEFMDVKDL TLAHVKSHLQ MYRTVKSTSK PVSSPDGSGN EDMLPGTAAS  360
LHENANCLFN QRGSAISNES LQEHANCDLP SANLWSNSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-17282336458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-17282336458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-17282336357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-17282336357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-17282336357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-17282336357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-17282336458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-17282336458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-17282336458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-17282336458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-17282336458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-17282336458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007036996.21e-134PREDICTED: transcription repressor KAN1 isoform X3
RefseqXP_021292370.11e-133transcription repressor KAN1-like isoform X2
TrEMBLA0A061FX921e-134A0A061FX92_THECC; Homeodomain-like superfamily protein, putative isoform 4 (Fragment)
STRINGEOY214941e-132(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66062645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.13e-55G2-like family protein