PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_20165_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 280aa    MW: 31109.9 Da    PI: 10.3345
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_20165_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.23.2e-118762086
        trihelix 20 rlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    +l+rg+lk+++W+ev++ + +++ ++++pk   qCk++++ ++k+yk +k+   ++  +  s++++f++l+
  Neem_20165_f_1  8 ELSRGNLKQKHWKEVADIVsSREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKIMSG--GGASKWVFFEKLD 76
                    5789***************866677776654449*****************99997..66679******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-18178No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
AWGERYLELS RGNLKQKHWK EVADIVSSRE DYTKTPKTDI QCKNRIDTVK KKYKLEKAKI  60
MSGGGASKWV FFEKLDQLIG PTAKIPVTAA AAAAGAAGSS RVPMGIPVGM RNQMVVATKN  120
QQQSNVFGSG GQKIQLRKRG GVAAPVETES EESGEESADS MDSFPPEKRQ RVVGNTSKGK  180
KEKDKSGWGD SVRMLTQAIL KFGEAYEQAE SAKLQQVVEM EKQRMKFAKE LELQRMQPAI  240
FPGRGCGDGI ARYKWLRQLL LLISHLCKTV YLVKAMLQDI
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818055e-49LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBankLN7132555e-49LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465837.12e-97trihelix transcription factor ASIL2
SwissprotQ9LJG83e-69ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A067DRV53e-91A0A067DRV5_CITSI; Uncharacterized protein
TrEMBLV4UKU33e-91V4UKU3_9ROSI; Uncharacterized protein
STRINGXP_006465837.17e-97(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-52sequence-specific DNA binding transcription factors