PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_20008_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 684aa MW: 79273.8 Da PI: 7.9772

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_20008_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67	4.8e-21	58	133	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF++r+ + ++s+ +g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+++++++eHnHel Neem_20008_f_1 58 DFYCQYAEHVGFKIRTGQLYRSRSDGSVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVRRRDSGKWVLDQVQKEHNHELE 133 6*************************************876..............589**************************96 PP
2	FAR1	67.5	3.4e-21	212	286	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+++GF++r+ + +sk++g+it+r+fvCskeg++++ +r+gC a +++k+++ g w v++l++eHnH+l Neem_20008_f_1 212 QFYQAYAENMGFRIRIGQLFRSKHDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRKEFGSWIVDRLQKEHNHDL 286 6*************************************999..............4899************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-17	58	133	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.2E-17	212	286	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.151	560	606	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-6	581	604	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-6	581	608	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MPKVQDLNIE ECGNAMILKA YPIGVLRVAD NVNGEDEGKS RIEPYAGLEF DSADEARDFY 60 CQYAEHVGFK IRTGQLYRSR SDGSVSSRRF VCSKEGFQLN SRTGCPAFIR VRRRDSGKWV 120 LDQVQKEHNH ELESAGENHS PIVHQRNPSA TRSSINVSHR PKMKLFEEVD NGRPCPSGVI 180 SFKRLKRCGG EGECAAEPCT GIEFNSANEA YQFYQAYAEN MGFRIRIGQL FRSKHDGSIT 240 SRRFVCSKEG FQHPSRVGCG AFMRIKRKEF GSWIVDRLQK EHNHDLEIQV GINRKNFAAS 300 KKFIEDVSGG LDSVDIADIN NGIVTKRSRE NNIGSEWYSV LFEYFQTRQA EDTGFFHSVE 360 VDNGRCMSVF WADGRSRFSC SQFGDAIIKA KEREFLRTMS NEFRYEYEKC IYQSQTNVQF 420 STMWSALVNR YGLKENVWLK EMYEKRECWV PLYLRGSFFA GIPIGESIES FFGTTLTAQT 480 PLREFISRYN QGLEHRREEE KKEDFNMFNL QAFLQTKEPI EEQCRKLYTL TMFKLFQKEL 540 VQCYNYLVMK TYEEATIVRY LVRNCGNEDE KHVVTFSALN VNCSCQMFEF EGMLCRHILR 600 VFNVLEVKEI PSQYILHRWT RNAVYGVLRD AESGFSAQEL KALMVWSLRE TACKYIESGT 660 GSLEKHKLAY EIMREGGNKL CWQR

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MPKVQDLNIE ECGNAMILKA YPIGVLRVAD NVNGEDEGKS RIEPYAGLEF DSADEARDFY  60
CQYAEHVGFK IRTGQLYRSR SDGSVSSRRF VCSKEGFQLN SRTGCPAFIR VRRRDSGKWV  120
LDQVQKEHNH ELESAGENHS PIVHQRNPSA TRSSINVSHR PKMKLFEEVD NGRPCPSGVI  180
SFKRLKRCGG EGECAAEPCT GIEFNSANEA YQFYQAYAEN MGFRIRIGQL FRSKHDGSIT  240
SRRFVCSKEG FQHPSRVGCG AFMRIKRKEF GSWIVDRLQK EHNHDLEIQV GINRKNFAAS  300
KKFIEDVSGG LDSVDIADIN NGIVTKRSRE NNIGSEWYSV LFEYFQTRQA EDTGFFHSVE  360
VDNGRCMSVF WADGRSRFSC SQFGDAIIKA KEREFLRTMS NEFRYEYEKC IYQSQTNVQF  420
STMWSALVNR YGLKENVWLK EMYEKRECWV PLYLRGSFFA GIPIGESIES FFGTTLTAQT  480
PLREFISRYN QGLEHRREEE KKEDFNMFNL QAFLQTKEPI EEQCRKLYTL TMFKLFQKEL  540
VQCYNYLVMK TYEEATIVRY LVRNCGNEDE KHVVTFSALN VNCSCQMFEF EGMLCRHILR  600
VFNVLEVKEI PSQYILHRWT RNAVYGVLRD AESGFSAQEL KALMVWSLRE TACKYIESGT  660
GSLEKHKLAY EIMREGGNKL CWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006419768.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_024047968.1	0.0	protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	1e-171	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2P5VQ29	0.0	A0A2P5VQ29_GOSBA; Uncharacterized protein
STRING	XP_006419768.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	1e-164	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]