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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_18349_f_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | G2-like | ||||||||
| Protein Properties | Length: 246aa MW: 27727.4 Da PI: 7.7302 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 38.5 | 2.5e-12 | 19 | 43 | 2 | 26 |
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26
prlrWtpeLH++Fv+a+e+LGG+ek
Neem_18349_f_1 19 PRLRWTPELHHCFVHAIERLGGHEK 43
8**********************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 6.9E-11 | 15 | 45 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 246 aa Download sequence Send to blast |
MGSCGRSGAV RQYIRSKVPR LRWTPELHHC FVHAIERLGG HEKKNSTHQR RQAFDDCVDE 60 VNDDHMGFHQ YSRSEAIKES DSSQCIYSTT SLVPSKRART ETRSSISDQN LQCSQGICET 120 APSNPYHFDD YLQQNKGNVN EHNKRIKECY GLVEKQEDQK GSKEVRQKHD HKWGGEEGNN 180 FELSLSLSLP QPSSQRSNGC SSTSEMGGEA ISSYPNSNNS FKDCFRSSGR GRYNVNLDLS 240 IALCGT |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006470870.1 | 2e-78 | two-component response regulator ARR12 | ||||
| TrEMBL | A0A067ERQ0 | 2e-75 | A0A067ERQ0_CITSI; Uncharacterized protein | ||||
| STRING | XP_006470870.1 | 8e-78 | (Citrus sinensis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM363 | 28 | 184 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G14600.1 | 7e-15 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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