PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_18213_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ZF-HD
Protein Properties Length: 290aa    MW: 32194.2 Da    PI: 8.6068
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_18213_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.52.8e-3276131359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     + rY+eClkNhAa++Gg+++DGCgEfmps geegt++alkCaAC+CHRnFHR+e + 
  Neem_18213_f_1  76 NGRYRECLKNHAANIGGNVFDGCGEFMPS-GEEGTIEALKCAACDCHRNFHRKELDG 131
                     569*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-2978128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2478130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.4E-3178128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.87479128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.3E-20217283IPR009057Homeodomain-like
PROSITE profilePS500718.584220284IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-31221284IPR009057Homeodomain-like
TIGRFAMsTIGR015655.1E-30222279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEIKLENETK TPGSERRRDG NNNGTSIHSF PQTLDHHLQR QPSLGQGRSP NPDRATVTSA  60
TIAPISTVSN SKPATNGRYR ECLKNHAANI GGNVFDGCGE FMPSGEEGTI EALKCAACDC  120
HRNFHRKELD GESQFTANSG RRAVMLNPLQ LPPALPSPTM IHHQKYTINM HTSPSSAIIA  180
PMNVAFGGIS GGNESSSEDL NVFHSNADGI HPPPPPPYVL SKKRFRTKFT QEQKEKMMEF  240
AEKVGWRLQK QDEEEVEKFC AEVGVKRQVF KVWMHNNKNN VKKQQPADPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-252232801875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021284140.11e-138zinc-finger homeodomain protein 5
SwissprotQ9FRL53e-73ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A061FD051e-133A0A061FD05_THECC; Homeobox protein 33 isoform 1
TrEMBLA0A1Q3CN681e-133A0A1Q3CN68_CEPFO; ZF-HD_dimer domain-containing protein
STRINGEOY147841e-134(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.14e-72homeobox protein 33