PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_17921_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 625aa MW: 69955.7 Da PI: 4.5302 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.2e-53 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeel+ +yLk+kv +k++++ + i+ +diyk+ePwdLp k k+k+++kewyfFs dkky +g+r+nrat++gyWk+tgkd++v+ Neem_17921_f_2 10 LAPGFRFHPTDEELIRYYLKRKVCNKPFRF-DPISVIDIYKSEPWDLPdKsKLKTRDKEWYFFSMLDKKYGNGSRTNRATEKGYWKTTGKDRPVH 103 579**************************9.99**************96358889999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv++ grap+ge+t+Wvmheyrl Neem_17921_f_2 104 H-NTRTVGMKKTLVYHIGRAPRGERTNWVMHEYRL 137 *.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-62 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.18 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-28 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MGRDGASTSL APGFRFHPTD EELIRYYLKR KVCNKPFRFD PISVIDIYKS EPWDLPDKSK 60 LKTRDKEWYF FSMLDKKYGN GSRTNRATEK GYWKTTGKDR PVHHNTRTVG MKKTLVYHIG 120 RAPRGERTNW VMHEYRLTDE ELEKAGVAQD AFVLCRIFQK SGSGPKNGEQ YGAPFIEEEW 180 EDDEVVEAAL VPGQDMVADE LVVGDDAYFE TTDLDQVKEI VCSVSELPGD TVFVHSLYEC 240 VPSTQNPEVA NQSENATHPL NFYYGDSSNH VEHSRDLSAD DQKPMIGMDE NQHDSGLRAE 300 QKFSDMPRQY EMDTRPVKDE HIESSNNVSA GGVNYLLDEP YLDATDNPPF SDGLYLEAND 360 LSHTLEADSE GFDMVEEYLN FFDANDDNSE YLTFDASEIM GSENNISDQA PLTTEQVNEV 420 PDQVSMAGQP QSEAHGNDEA STSKQKPDAT KFESDIKYPF LKQASQMLGG FPAPPAFASE 480 FPTKDAALRL NSVAQPSSSV HVTAGMIRIR NITLSGTGLD WSIGKNGDVN IVFSFDLSQS 540 DVSPINSGNF LFGKTGTLTS RSLLFFLFFW VLILSVSFKI GTCIYTKLTA AVQHSGMIKF 600 LADAQVLPMD SNLKLYTTLG RTRGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-48 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-48 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-48 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-48 | 9 | 166 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-48 | 9 | 166 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-48 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-48 | 9 | 166 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436536.1 | 0.0 | NAC domain-containing protein 78 isoform X1 | ||||
Refseq | XP_006485307.1 | 0.0 | NAC domain-containing protein 78 isoform X1 | ||||
Swissprot | Q84K00 | 0.0 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | V4TJ36 | 0.0 | V4TJ36_9ROSI; Uncharacterized protein | ||||
STRING | XP_006485307.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436536.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-160 | NAC domain containing protein 2 |