PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_178_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 446aa MW: 51270.5 Da PI: 7.0143

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_178_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.9	1.8e-30	258	342	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r +e+r+ + lk+plWeevs+ m++ g++rs+k+Ckekwen+nk+++k ke+ kkr s++s+tc yfdql+ Neem_178_f_1 258 RWPKDEVEALIQVRIGLESRFLEPGLKGPLWEEVSSLMASMGYQRSAKRCKEKWENINKYFRKAKETGKKR-SPRSKTCTYFDQLD 342 8*******************************************************************8.77788******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-21	257	344	No hit	No description
PROSITE profile	PS50090	6.934	257	315	IPR017877	Myb-like domain
CDD	cd12203	7.32E-25	257	322	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MLRGNIYLNR CNNKQCDEDK APDIECNKNK KHYNHTLKQV DQRKERCKNI GTKYTQFSEL 60 EAVCNLANGK IFETSGSDLT GDKSPKDAGA VFLMSLRDMQ CTNTCEMADA DAELGSENSI 120 EEACLGKVNE NKKRKRKLKE NYSGMIEFFK CLVQQLMDHQ EGLHRKYLEA VHRMDKERAE 180 REEKWRQQET EKHNREAIAR AHEQSIASNR EDQLISLIQK ITGRSINLPP RKSALLLQPQ 240 LTKEQTKELT GMKGETNRWP KDEVEALIQV RIGLESRFLE PGLKGPLWEE VSSLMASMGY 300 QRSAKRCKEK WENINKYFRK AKETGKKRSP RSKTCTYFDQ LDQLYSRTPL NLPSSSSNPA 360 FDSDIEQQNQ GYSELLEAFA AERDHLGIAQ NTSTAGNFDV FEMGSLRLNF DGIPNNQTIE 420 FEQGRHGNEN KDCVEEHKVD GEQQVE

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MLRGNIYLNR CNNKQCDEDK APDIECNKNK KHYNHTLKQV DQRKERCKNI GTKYTQFSEL  60
EAVCNLANGK IFETSGSDLT GDKSPKDAGA VFLMSLRDMQ CTNTCEMADA DAELGSENSI  120
EEACLGKVNE NKKRKRKLKE NYSGMIEFFK CLVQQLMDHQ EGLHRKYLEA VHRMDKERAE  180
REEKWRQQET EKHNREAIAR AHEQSIASNR EDQLISLIQK ITGRSINLPP RKSALLLQPQ  240
LTKEQTKELT GMKGETNRWP KDEVEALIQV RIGLESRFLE PGLKGPLWEE VSSLMASMGY  300
QRSAKRCKEK WENINKYFRK AKETGKKRSP RSKTCTYFDQ LDQLYSRTPL NLPSSSSNPA  360
FDSDIEQQNQ GYSELLEAFA AERDHLGIAQ NTSTAGNFDV FEMGSLRLNF DGIPNNQTIE  420
FEQGRHGNEN KDCVEEHKVD GEQQVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	KKRKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00651	PBM	Transfer from LOC_Os02g01380	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021596805.1	1e-130	trihelix transcription factor GTL2-like
Refseq	XP_021596807.1	1e-130	trihelix transcription factor GTL2-like
TrEMBL	A0A251IZR6	1e-129	A0A251IZR6_MANES; Uncharacterized protein
STRING	POPTR_0018s05520.1	1e-125	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16469	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-47	Trihelix family protein