PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1766_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 743aa MW: 84825.6 Da PI: 7.0332

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1766_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.3	1.6e-20	44	137	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel Neem_1766_f_2 44 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGHPQLKPSHDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNVHNHELL 137 6*************999887455667****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-17	44	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-24	260	351	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.052	536	572	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.9E-8	545	569	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	547	574	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence Send to blast
MDSSPDDFGS IEEMPEDSIL ARQTSVTLVP FIGQRFVSQD AAYEFYCSFA KQCGFSIRRH 60 RTRGKDGVGR GITRRDFTCH RGGHPQLKPS HDGKLQRNRK SSRCGCQAYM RIVKRADFDV 120 PEWRITGFSN VHNHELLKSN EVQLLPAYCS MSADDKSRIC MYAKAGMSVR QMLRLMELEK 180 GVKLGGLPFT EIDVRNLLQS FRNVDRDNDV MDLLKMCKYK KDKDPNFKYN FQIDANNRLE 240 HIAWSYASSV QSYEVFGDAI IFDTTHRLDA YDMILGIWLG VDNHGTNCFF GCVLIRDENV 300 QSFSWALKTF LDFVNGKTPE TILTDQNMWL KEAVAIVMPR TKHGFCIWHI IAKFTDWFSV 360 LLGSKYDEWK ADFRQLYDLH SVEDFDLGWK EMVDKYGLQG NKHIISLYAL RTFWALPYLR 420 CYFFAGMTNA FQSELINSFI QRFVSAQFHS DNFVEQVAAI VELKDEAGGK QKIQRKVQKI 480 SLKTGSPMES HAAAILTPYA FSRLQEELVL APQYASVMVD DTYFIVRHHT DMDGGYKVLW 540 IPHDDFISCS CHFFEFSGIL CRHVLRVLSN NNCFHIPDRY LPTRWRDVSL SLTKPLQTST 600 SDEHAGKVQL LQSMVSTLIT ESSGTEERLD VACDQVATVL SRIKEFPKPA HGDNAVAYNS 660 PSDSLILPQV EDSDGIIRGY TVGSSHESIN LGKLKERRLR DSIDIYRKRR RCSVPCCGEF 720 GHDAADCPMM GADDLNGDGL GFL

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence Send to blast

MDSSPDDFGS IEEMPEDSIL ARQTSVTLVP FIGQRFVSQD AAYEFYCSFA KQCGFSIRRH  60
RTRGKDGVGR GITRRDFTCH RGGHPQLKPS HDGKLQRNRK SSRCGCQAYM RIVKRADFDV  120
PEWRITGFSN VHNHELLKSN EVQLLPAYCS MSADDKSRIC MYAKAGMSVR QMLRLMELEK  180
GVKLGGLPFT EIDVRNLLQS FRNVDRDNDV MDLLKMCKYK KDKDPNFKYN FQIDANNRLE  240
HIAWSYASSV QSYEVFGDAI IFDTTHRLDA YDMILGIWLG VDNHGTNCFF GCVLIRDENV  300
QSFSWALKTF LDFVNGKTPE TILTDQNMWL KEAVAIVMPR TKHGFCIWHI IAKFTDWFSV  360
LLGSKYDEWK ADFRQLYDLH SVEDFDLGWK EMVDKYGLQG NKHIISLYAL RTFWALPYLR  420
CYFFAGMTNA FQSELINSFI QRFVSAQFHS DNFVEQVAAI VELKDEAGGK QKIQRKVQKI  480
SLKTGSPMES HAAAILTPYA FSRLQEELVL APQYASVMVD DTYFIVRHHT DMDGGYKVLW  540
IPHDDFISCS CHFFEFSGIL CRHVLRVLSN NNCFHIPDRY LPTRWRDVSL SLTKPLQTST  600
SDEHAGKVQL LQSMVSTLIT ESSGTEERLD VACDQVATVL SRIKEFPKPA HGDNAVAYNS  660
PSDSLILPQV EDSDGIIRGY TVGSSHESIN LGKLKERRLR DSIDIYRKRR RCSVPCCGEF  720
GHDAADCPMM GADDLNGDGL GFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	706	710	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021609593.1	0.0	protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2C9WPN2	0.0	A0A2C9WPN2_MANES; Uncharacterized protein
STRING	cassava4.1_002350m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]