PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1760_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 256aa    MW: 28145 Da    PI: 4.7418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1760_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1864113255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Neem_1760_f_1  64 LYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 113
                    69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.3E-1363113IPR001471AP2/ERF domain
CDDcd000182.25E-3263123No hitNo description
SuperFamilySSF541711.44E-2164122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-3164122IPR001471AP2/ERF domain
SMARTSM003808.3E-3764127IPR001471AP2/ERF domain
PROSITE profilePS5103223.3864121IPR001471AP2/ERF domain
PRINTSPR003672.7E-106576IPR001471AP2/ERF domain
PRINTSPR003672.7E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSEPQNSSET ESSSNSSPSS PFSQNSLLDA KTNTNKNTTT NNQETHNQDS RKIKRIRDSS  60
KHPLYRGVRM RNWGKWVSEI REPRKKSRIW LGTFPTPEMA ARAHDVAALS IKGNSAILNF  120
PELADSLPRP VSLAPRDVQA AAAKAAQMDK FDSTSTSPSS SSLSSLVSAM DLSTGSDELS  180
EIVELPSLGT SYDYNSAELR NEFVFVDSVD GWMYTPPWLQ SVEDCSGYVC DQFGGLPENS  240
TTVFPNSFGE GLLWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1959122973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012129.11e-106PREDICTED: dehydration-responsive element-binding protein 3
SwissprotQ9LYD38e-84DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A061GK291e-105A0A061GK29_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY297481e-106(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-80ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]