PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_17588_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 115aa MW: 13554.8 Da PI: 10.8758 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.3 | 9.5e-19 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ rq+ +skR+ g+lKKA+EL vLCd++ ++++fs+tg+ Neem_17588_f_1 10 RLESMKARQTKYSKRKIGLLKKAKELAVLCDTDLSLLMFSPTGR 53 6789999***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.89 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-24 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-22 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-17 | 11 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MGRRKLRIRR LESMKARQTK YSKRKIGLLK KAKELAVLCD TDLSLLMFSP TGRPSLYVGQ 60 NNDLSTVLER LSKLSIEDRE ERRGYTMKML KKIYANSEVD PRNFSLDRGY RYTFN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007012432.1 | 6e-50 | PREDICTED: agamous-like MADS-box protein AGL65 | ||||
TrEMBL | A0A2H5NBQ5 | 3e-65 | A0A2H5NBQ5_CITUN; Uncharacterized protein | ||||
STRING | XP_006474504.1 | 2e-63 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7330 | 18 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26320.1 | 1e-27 | AGAMOUS-like 33 |