PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1707_f_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 587aa MW: 66973.9 Da PI: 7.9841 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.5 | 5.2e-18 | 359 | 449 | 2 | 88 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +k+l++sdv+++gr+vlpk+ aee+ +++ +e+++++++d s ++W++k++y ++ks++yv++ ++ +Fvk+n+L+ gD+++++ d+++ Neem_1707_f_5 359 KKELKNSDVGSLGRIVLPKREAEENlpSLSDKEGIQVVIKDvYSDQVWTLKFKYwsNNKSRMYVFE-NTGDFVKQNRLEIGDSLTLYEDENK 449 6899***********************66667899******7888*******99878888889999.*******************944433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-24 | 354 | 450 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.79E-21 | 357 | 449 | No hit | No description |
PROSITE profile | PS50863 | 10.236 | 358 | 461 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-20 | 358 | 461 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.7E-19 | 358 | 450 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-14 | 360 | 449 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010344 | Biological Process | seed oilbody biogenesis | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MKAVTHHSTE NTEITCSDEI LCVGNNSKKL RITTEQVTFD HGGTAKLANN KPATSPEWHW 60 QQQPHGPKAK VSSCRVSAAL FLYNFMAFSL SFFHSTPALL HHSTRFSCFF DTWAFSTGSI 120 FRYQGLFLEP DVHSLLQIIQ LKLIHTHSSS LSNSVHFNNM EKYNFSLASS SKATSCNNTN 180 TTSTNLRQPN MVYTQNSQFS NYETMSNSST LPQHFFPAQY FLPYHHQTMQ FASTYPIQQQ 240 TGYPFAPYPV YPFWLAQSAI DNRAGTAVQE GSWFVQPDEV VKEQQRGALD PHKTKIARIK 300 RKLARQKSLS LQRNASSGAS SSVPSSAHLE TRRLTMYGAD RDLYKFCTPD NKRLRVLLKK 360 ELKNSDVGSL GRIVLPKREA EENLPSLSDK EGIQVVIKDV YSDQVWTLKF KYWSNNKSRM 420 YVFENTGDFV KQNRLEIGDS LTLYEDENKN LGQYFSINKV ERPAAEPSYT QHHSSHNYIH 480 TPAMRQARDE EEANLALLIE QLKHKEQQEA YYNLMTLPME DFSRQSGQPN EEGSSNNITN 540 PGIHRPHMAA PSLTVSKMKN DDDHHSVDDW YGALDMLPDV NTYNFSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 2e-48 | 348 | 458 | 3 | 111 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 2e-48 | 348 | 458 | 3 | 111 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00032 | PBM | Transfer from AT1G28300 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024046749.1 | 1e-150 | B3 domain-containing transcription factor LEC2 | ||||
TrEMBL | A0A2H5N2T8 | 1e-150 | A0A2H5N2T8_CITUN; Uncharacterized protein | ||||
STRING | XP_006449368.1 | 1e-144 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9262 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 3e-51 | B3 family protein |