PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1673_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | WRKY | ||||||||
Protein Properties | Length: 396aa MW: 43272.5 Da PI: 5.611 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.8 | 1.1e-23 | 215 | 269 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr C+s+ gC ++k+vers++dp+++++ Y+g+H+h+ Neem_1673_f_2 215 ADLWAWRKYGQKPIKGSPYPR----CSSSkGCAARKQVERSNTDPNIFIVSYTGDHTHP 269 699***************996....99888****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-24 | 202 | 271 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.968 | 209 | 271 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-20 | 209 | 271 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-30 | 214 | 270 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-18 | 216 | 269 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGERLPAATA AENWDLQAVV RCYSSAAHNA ATTTANDAQE INTTTDGNNS CAENPLSFLT 60 TLKFEEEDDP FSFPNLLPTK NDGLEELQDS YKPFFRTPSS SCSVPQQLID DVLQQQLTHT 120 STSATFPVSP TSSSPFVFGE NQIQQPRHVQ QQSYHVLQDL QRQPQILQQH QQQQPPVIGS 180 ALPLRPVPSQ ASRSRKRKTP QKRMVCHVTA ENLSADLWAW RKYGQKPIKG SPYPRCSSSK 240 GCAARKQVER SNTDPNIFIV SYTGDHTHPR PTHRNSLAGS TRNKLSRTQN PVGKDSTPPT 300 LANASCSSPL STTCQSPTAP PPAPADEEKN TMENSHREGA DKEREEGDSQ GFAEEEDDYF 360 DDLLIPNLAA AIDEDFFKGL KDFSSSSASG GGGGGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-15 | 215 | 272 | 17 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-15 | 215 | 272 | 17 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 198 | SRKRKT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422058.1 | 1e-114 | probable WRKY transcription factor 27 | ||||
Swissprot | Q9FLX8 | 2e-54 | WRK27_ARATH; Probable WRKY transcription factor 27 | ||||
TrEMBL | A0A2H5NZT6 | 1e-117 | A0A2H5NZT6_CITUN; Uncharacterized protein | ||||
STRING | XP_006422058.1 | 1e-113 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9998 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 2e-54 | WRKY DNA-binding protein 27 |
Publications ? help Back to Top | |||
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