PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_16670_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | ARF | ||||||||
Protein Properties | Length: 570aa MW: 63168.7 Da PI: 8.6368 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.9 | 4e-23 | 135 | 236 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++ Neem_16670_f_1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 225 99*****************************954.5444.48************************************************..568 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ Neem_16670_f_1 226 KQQLLLGIRRA 236 8889****997 PP | |||||||
2 | Auxin_resp | 121 | 8.8e-40 | 261 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+ dldpvrW+nS+Wr+L+ Neem_16670_f_1 261 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVYnNQISLGMRFRMMFETEESGTRRYMGTITGIGDLDPVRWKNSQWRNLQ 344 79********************************98799*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-43 | 124 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-41 | 126 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.62E-18 | 134 | 226 | No hit | No description |
PROSITE profile | PS50863 | 11.871 | 135 | 237 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-23 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-21 | 135 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.2E-35 | 261 | 344 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MKTPANSAGA SAVMAASNPG EGGEKKTINS ELWHACAGPL VNLPAAGTHV VYFPQGHSEQ 60 VAASMKKDID GQVPNYPNLP SKLFCLLLNV TLHADPETDE VYAQMTLQPV TSFEKEDLLR 120 SDLALKSNKP QTEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP PAQELMARDL 180 HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP 240 ANLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVVPLAK YYKAVYNNQI 300 SLGMRFRMMF ETEESGTRRY MGTITGIGDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS 360 IWEIEPVTAP FFICPPPFFR PKHPRQADDD SFDLDNVFKR TMPWIGDDFG IKDSQALPGL 420 SLVQWMNMQQ NSSLANSMQS GYMHSMSGSV LQNLNGADLS RQLGLPPQMP QPNNLQFTGQ 480 RLPQQVQQID QLQKLPSTMN QLGSIIPPQQ SLGDITQQSR QNMITQTLPS EASATKTIIF 540 GTTVCHATAC SSYSTPRSAK TAFRCVSGLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-174 | 22 | 365 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF939305 | 2e-44 | KF939305.1 Dimocarpus longan auxin response factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023876353.1 | 0.0 | auxin response factor 19-like | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A2N9GCT5 | 0.0 | A0A2N9GCT5_FAGSY; Auxin response factor | ||||
TrEMBL | A0A2N9HN13 | 0.0 | A0A2N9HN13_FAGSY; Auxin response factor | ||||
STRING | XP_006474325.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006453190.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16229 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |