PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_16277_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C2H2 | ||||||||
Protein Properties | Length: 310aa MW: 34131.1 Da PI: 6.7795 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 214 | 236 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Neem_16277_f_1 214 HECSICGAEFSSGQALGGHMRRH 236 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.55E-8 | 137 | 160 | No hit | No description |
Pfam | PF13912 | 4.1E-11 | 137 | 162 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.138 | 138 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.3 | 138 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 140 | 160 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.55E-8 | 209 | 236 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 212 | 236 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 9.2E-13 | 213 | 237 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.785 | 214 | 241 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 214 | 236 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 216 | 236 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MTTEEAHNLT MEEAQEEVMG CKDYMQIMKG KRTKRQRLQS PLPLAVLPVS SCSSLAESGG 60 DHGERFSDNN SVVIGGFDRP TTSVEEFTTS SEDEEDMANC LILLAQGKSS AACQYQPSAA 120 NHSTATSTKP VGEGLYVYEC KTCSRCFPSF QALGGHRASH KKPKMNTNEE RKGIMLMEEE 180 DDHFGNMSTA LSLQIANRVA NLSANNNSKA NKVHECSICG AEFSSGQALG GHMRRHRNFM 240 STTTTRGLST INNDHSPEAK KRQRNILQLD LNLPAPEVDH ERRGGESKFG FASKEQVIVF 300 SRSSLVDCHY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428462.2 | 1e-112 | zinc finger protein ZAT5 | ||||
Refseq | XP_006493540.1 | 1e-112 | zinc finger protein ZAT5-like | ||||
TrEMBL | V4SM30 | 1e-109 | V4SM30_9ROSI; Uncharacterized protein | ||||
STRING | XP_006493540.1 | 1e-112 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6347 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 5e-54 | C2H2 family protein |