PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_16005_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ZF-HD

Protein Properties

Length: 300aa MW: 33271 Da PI: 6.8207

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_16005_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.8	2.3e-32	44	99	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k+rY+eClkNhA+ +GghavDGC+Efmp+ geegt +alkCaAC+CHRnFHR+e e+ Neem_16005_f_1 44 KARYRECLKNHAVGIGGHAVDGCCEFMPA-GEEGTLDALKCAACNCHRNFHRKEIES 99 789***********************9.999******************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.3E-29	45	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.2E-29	46	97	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	46	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.278	47	96	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	6.9E-31	160	232	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-18	163	231	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.3E-26	173	229	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEFEDQEEQE EEMGLAASYD SLGNSSRVQM MTSEPATEAH PLRKARYREC LKNHAVGIGG 60 HAVDGCCEFM PAGEEGTLDA LKCAACNCHR NFHRKEIESS APPVAGPVAG AEFYFQHHHP 120 TQVPQFPPYY RTPAGYLHVA PHHRPLALPS TSGGGTHSRE DQEDVSNLGG SSRKRFRTKF 180 TQEQKDKMLE LAEKLGWRIQ KHDEEVVQQF CNETGVKRHV LKVWMHNNKH TLVGRFVVSN 240 DQHWVLHENA SANSSICSHA NPNPDVGKLN PNTSAKAANL NCGPFGNLGQ RFAPSPSDSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	9e-26	174	231	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426297.1	1e-119	zinc-finger homeodomain protein 2
Refseq	XP_006466284.1	1e-119	zinc-finger homeodomain protein 2
Swissprot	Q6YXH5	1e-79	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A2H5NFE0	1e-119	A0A2H5NFE0_CITUN; Uncharacterized protein
STRING	XP_006466284.1	1e-118	(Citrus sinensis)
STRING	XP_006426297.1	1e-118	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	8e-71	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]