PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_15903_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 511aa    MW: 56679 Da    PI: 7.1274
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_15903_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.81.3e-13265315155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+       g    +k+++lg ++t+ eAa+a+++a+ k +g
  Neem_15903_f_1 265 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLYDTEVEAARAYDKAAIKHNG 315
                     89********.7******...5...334336**********99**********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.007166230IPR001471AP2/ERF domain
SMARTSM003804.5E-12190236IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-6191231IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-7203231IPR001471AP2/ERF domain
CDDcd000188.44E-26265325No hitNo description
PfamPF008479.0E-9265312IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-17265324IPR016177DNA-binding domain
PROSITE profilePS5103215.87266323IPR001471AP2/ERF domain
SMARTSM003805.2E-31266329IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-16266323IPR001471AP2/ERF domain
PRINTSPR003671.1E-5267278IPR001471AP2/ERF domain
PRINTSPR003671.1E-5305325IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGEKVNQRED MLDLNLDIVS CESSSVSGEK KKVMMVTNEK VLLEPIRTQM EDSGTSNSSI  60
INCEEIPANA GDENSSNNVN SQFIFDILKK QKGEITVKQG AEDDNNNNNI TNASSSGPVT  120
RQLFPLTGEK GEGETEFAAM KSPARPPQWL NLSYADPSGE GGGEQELRAV QQKQQQVRKS  180
RRGPRSRSSQ YRGVTFYRRT SGFDTAHAAA RAYDRAAIKF RGVDADLNFS LSDYEEDMKQ  240
MKHLSKEEFV LILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQLLGKKY IYLGLYDTEV  300
EAARAYDKAA IKHNGREAVT NFEPSAYEGE KILDSNNGGS SCHNLDLSLR ISQPTNGPNG  360
NDHCNLGNFL FHCDACELPN KERQALESST LVSMAMQLHP NHVLPMAPEY PSDIAGLQPG  420
FLEGYEERAT EKRAQTVSAQ RFSNWAWQMH SNGNVAPMPV LSNAASSGFS PPHSTASPST  480
IQRNNPVRNM FLATQNTFAP SPPNYHQNYR S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436192.11e-164AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_006485948.11e-164AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ8H4437e-88AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A1Q3B7461e-164A0A1Q3B746_CEPFO; AP2 domain-containing protein
STRINGXP_006485948.11e-163(Citrus sinensis)
STRINGXP_006436192.11e-163(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164641011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-68related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]