PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1512_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 366aa    MW: 40605.7 Da    PI: 8.3275
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1512_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.3e-36291202102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++++++isw+++g++fvv++++ fa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF+++ F++g+k+ll++i
  Neem_1512_f_4  29 FLTKTYQLVDDHTIDDVISWNKDGSTFVVWNPTVFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFANDCFRRGEKQLLREI 115
                    9*****************************************************************99.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  Neem_1512_f_4 116 QRRKM 120
                    **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.4E-5625118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.9E-3826118IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.88E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAPTPTTVDQ NGDSTSTAGE SQRSMPTPFL TKTYQLVDDH TIDDVISWNK DGSTFVVWNP  60
TVFARDLLPR YFKHNNFSSF VRQLNTYGFK KVVPDRWEFA NDCFRRGEKQ LLREIQRRKM  120
SIATTTTQPQ PVSVTVAAVP LAKPMVSPSN SGEEQVISSN SSPVGAAHTC AQTGAGGHTC  180
AEIIEENEKL RKENVQLNKQ LSEMKNLCNN IFTLMSNYAS AQAKSGSQAL DLLPEKRVPG  240
QGEEVSLFGV AIGAKRAREG EGASTEDETM QLQLQLPVKS EALDCQRSGG DDHRNHEDTP  300
WLRQSHRANQ RARNCMISNV KFSFINGCCT CTIVFGGARE SKEKSVRRRM KKGEESVIRI  360
SSLVVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-242912320125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038632.21e-143PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW43e-94HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1R3ITZ21e-142A0A1R3ITZ2_COCAP; Heat shock factor (HSF)-type, DNA-binding protein
STRINGEOY231331e-142(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-96heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]