PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1501_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 160aa    MW: 18314.6 Da    PI: 8.4883
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1501_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1383.6e-123283556
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                   ++ +r+q+NRe+ArrsR RK++ ++ L+  v +L + N +    ++  ++++
  Neem_1501_f_5 32 RKRKRMQSNRESARRSRMRKQKHLDDLTAQVTQLRKDNNQILTSINITTQQY 83
                   6789**********************************99988887777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.4E-182892IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7493093IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.1E-1031107No hitNo description
SuperFamilySSF579592.56E-123285No hitNo description
PfamPF001707.4E-103289IPR004827Basic-leucine zipper domain
CDDcd147021.10E-193384No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MASSSGSGNS SGFTQLQNSG SEENLQLVMD QRKRKRMQSN RESARRSRMR KQKHLDDLTA  60
QVTQLRKDNN QILTSINITT QQYMNIENEN SILRAQLMEL SQRLESLNEI LNFINPSKGI  120
FESDHHQGGI NTICDGFMNP MNIVYLNQPI MASPAEMFQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13152RKRKRMQSNRESARRSRMRKQK
24451RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306888.11e-78bZIP transcription factor 44
SwissprotC0Z2L52e-55BZP44_ARATH; bZIP transcription factor 44
TrEMBLB9H4F33e-77B9H4F3_POPTR; BZIP family protein
STRINGPOPTR_0005s25290.14e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-56basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]