PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1498_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 555aa    MW: 61092.8 Da    PI: 6.4473
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1498_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30345403259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Neem_1498_f_1 345 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 403
                    7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-33329405IPR003657WRKY domain
SuperFamilySSF1182901.29E-27337405IPR003657WRKY domain
PROSITE profilePS5081129.516339405IPR003657WRKY domain
SMARTSM007741.5E-36344404IPR003657WRKY domain
PfamPF031062.4E-26346403IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MDKGWGLTLD SDPLTNNFFR SQPPASSSSV NSFARFRTTN RVADSVRMFP FPASLGGGRE  60
VRDLPSPSDE NRVAVDEVDF FSEKKNKVDD DNQRIITSTV NVKRENSHED VRQRTSLDVN  120
TGLHLLTANT GSDQSTVDDG VSSDMEDKRA KSELVQLQAE LQHMNAENQR LRDMLSQVTN  180
NYSALQMHLV ALMQQQQQNH RAESTQEQDQ VVEGKAEDKK HEVMVPRQFL DLGPSATAEI  240
DEASNSSSEE RTLSGTPPNN NIEVASKEYV KSNGKSEMVS FDQAENSNGK RIGREESQES  300
ESRGWGANKV QKLNSSSKAM DQSNEATMRK ARVSVRARSE APMITDGCQW RKYGQKMAKG  360
NPCPRAYYRC TMAVGCPVRK QVQRCAEDRT ILITTYEGNH NHPLPPAAMA MASTTTAAAN  420
MLLSGSMSSA DGIMNPNLLA RAILPCSSSM ATISASAPFP TVTLDLTHSP NPLQYQRQPA  480
QFQVQFPGQP QNFPTVTTPP QLPQVFGQAL YNQSKFSGLQ LSQEIGTNSQ LPGAHQTLPP  540
TLHQPQQQSS SLADT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22331407176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449767.10.0probable WRKY transcription factor 31
SwissprotQ9XEC31e-168WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A2H5N4U20.0A0A2H5N4U2_CITUN; Uncharacterized protein
TrEMBLV4UAG60.0V4UAG6_9ROSI; Uncharacterized protein
STRINGXP_006449767.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.11e-141WRKY DNA-binding protein 31