PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14979_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 310aa    MW: 35100.3 Da    PI: 6.1128
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14979_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ed +lv+++k+ G g+W+  ++  g+ R++k+c++rw +yl
   Neem_14979_f_1 14 RGVWSPDEDAKLVQYIKENGHGNWRDLPKQAGLLRCGKSCRLRWINYL 61
                     899*****************************99************97 PP
2Myb_DNA-binding475.7e-1567122146
                      TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE+  +++++ +lG++           +W++Ia++++ gRt++++k++w++
   Neem_14979_f_1  67 RGPFSPEEEATIIQVHGLLGNNwlqslkvflflRWAAIASHLP-GRTDNEIKNFWNT 122
                      89*****************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.92965IPR017930Myb domain
SuperFamilySSF466893.56E-2512120IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002499.1E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-231668IPR009057Homeodomain-like
CDDcd001671.54E-91761No hitNo description
PROSITE profilePS5129414.64766128IPR017930Myb domain
SMARTSM007175.6E-1166126IPR001005SANT/Myb domain
PfamPF002491.0E-1367122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2469128IPR009057Homeodomain-like
CDDcd001672.08E-969124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGKTPCCDRE AVKRGVWSPD EDAKLVQYIK ENGHGNWRDL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGPF SPEEEATIIQ VHGLLGNNWL QSLKVFLFLR WAAIASHLPG RTDNEIKNFW  120
NTRLKKRLLY LDRYQQTQES SSSSEPSTIK SESASTRHMV QWENARVEAE ARLSIESSAD  180
KTDCDIFLRL WDSRVGESFR EITNKAGGVC ENAISETHTP MKLESGSIVG VQAKATGTST  240
STDNTHEQHD SYYRPKVEMM AVSDSIGSIE FTDSSDIALK LLLDFPGYNG MEFLHEQSDN  300
VSNFLDFQGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21141287108B-MYB
1h8a_C3e-211212825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421907.21e-134transcription factor MYB41
TrEMBLA0A2H5NLY41e-134A0A2H5NLY4_CITUN; Uncharacterized protein
STRINGXP_006490474.11e-133(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-83myb domain protein 17