PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14406_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 323aa    MW: 36771 Da    PI: 6.0607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14406_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.66.6e-2971323126
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +GfrF+Pt ee+v + Lkkk  +  +++ +++ke+d y+++Pw+L k   ++ +e  wyf++k   ky+++kr++r t sg+Wk  g+  ++++k
  Neem_14406_f_1   7 VGFRFQPTSEEIV-RLLKKKRLDPGFSV-HTVKEIDFYNFDPWELTKfsDIQCKEPIWYFYCKPYYKYSKSKREHRRTPSGFWKINGQGSDMTAK 99 
                     7************.99******999999.78**************843477778889******************************99999988 PP

             NAM  96 .kgelvglkktLvfykgra.pkgektdWvmhey 126
                      +++++  kk+L fy  r  +k  k +W+mhe 
  Neem_14406_f_1 100 nSKHVIAKKKILSFYLHRPiSKKAKPEWIMHEI 132
                     4666789999*****66541566799******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.9635152IPR003441NAC domain
SuperFamilySSF1019412.09E-326150IPR003441NAC domain
PfamPF023651.9E-157131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MELDSLVGFR FQPTSEEIVR LLKKKRLDPG FSVHTVKEID FYNFDPWELT KFSDIQCKEP  60
IWYFYCKPYY KYSKSKREHR RTPSGFWKIN GQGSDMTAKN SKHVIAKKKI LSFYLHRPIS  120
KKAKPEWIMH EIIIEDDPLY KEDFVVCRLE RRRASKPSIS TSDDSESSQQ HVAVAEDNSP  180
KCVLPPCQPI SDRNHVAEKT LKSQRLPSQC CDGYNDLDND CFSEVQSPTY PEQGRSYSNS  240
PGNGCDWSSH RDSEQVNDLI DSRRAFHCGE TGKTLNPEFN SSKSDGGVDI QAGSEADAET  300
DNAWADSLIV GGVDMDAGSE VRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-18815520168NO APICAL MERISTEM PROTEIN
1ut4_B3e-18815520168NO APICAL MERISTEM PROTEIN
1ut7_A3e-18815520168NO APICAL MERISTEM PROTEIN
1ut7_B3e-18815520168NO APICAL MERISTEM PROTEIN
4dul_A3e-18815520168NAC domain-containing protein 19
4dul_B3e-18815520168NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485394.12e-86NAC domain-containing protein 105-like
RefseqXP_024042303.12e-86NAC domain-containing protein 105-like
TrEMBLA0A1S8AC325e-85A0A1S8AC32_CITLI; NAC domain containing protein
STRINGXP_006485394.18e-86(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.14e-20vascular related NAC-domain protein 1