PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14329_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 245aa    MW: 27995.9 Da    PI: 8.3601
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14329_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.7e-34271182102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y ++ed++++++isw+++g+ fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ F+kg+++ll++
  Neem_14329_f_1  27 FLLKTYMLIEDQATDSIISWNAEGTGFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNEMFRKGERDLLCN 112
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Neem_14329_f_1 113 IRRRKA 118
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-3223116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5223116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.2E-3623116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MESTTNMIGC CDKGLLEYVR KSTPPPFLLK TYMLIEDQAT DSIISWNAEG TGFVVWQPAE  60
FARDLLPTLF KHSNFSSFVR QLNTYGFRKV ATSRWEFCNE MFRKGERDLL CNIRRRKAWA  120
NKQQAAAAAT AISTPAVGAG AGDQCDEDQR SSSSTSSLSE YSTLMDENKR LKKENGDLSS  180
ELTSMKRKCK DLLDLVAKYA NMEEDDRDHH QQIRMPLKLF GVRLEAEGER EMRKRKRAEI  240
IVMIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-21251163105Heat shock factor protein 2
5d8l_B3e-21251163105Heat shock factor protein 2
5d8l_D3e-21251163105Heat shock factor protein 2
5d8l_F3e-21251163105Heat shock factor protein 2
5d8l_H3e-21251163105Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323320.21e-114heat stress transcription factor B-3
SwissprotO222308e-74HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLB9II851e-112B9II85_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05680.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-65heat shock transcription factor B3