PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Neem_1397_f_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 27367.8 Da PI: 9.5355 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 85 | 107 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Neem_1397_f_3 85 SCSVCSRVYPTSRLLSIHVSEaH 107 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 5.4 | 84 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 122 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 124 | 147 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MAMVLDRKLE SEFPYWASVR RRFRPDSPFF ASGNIERELL AKQAALDFTE DEKYQLENMV 60 TDDGSSRLSS LEEFEDHYSA RHTASCSVCS RVYPTSRLLS IHVSEAHDSF FQAKVARGYA 120 MYECLVEGCG LKFKNYKSRQ QHLLDKHKFP TSFEFFKKAH PSKKQRQKHQ RKQAVHNKEA 180 STTMEVEDET IDGLVSAVSK LSTSDSTPSS VSFGRHTRGL TFVPRAVVRE RRPDSTKR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447049.1 | 1e-154 | zinc finger protein 511 | ||||
Refseq | XP_006470078.1 | 1e-154 | zinc finger protein 511 | ||||
TrEMBL | V4W2X6 | 1e-153 | V4W2X6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006470078.1 | 1e-153 | (Citrus sinensis) | ||||
STRING | XP_006447049.1 | 1e-153 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9971 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14140.1 | 2e-96 | zinc ion binding;nucleic acid binding;zinc ion binding |