PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1329_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 447aa    MW: 50892.7 Da    PI: 8.2081
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1329_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.6e-17203249148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed+ l ++v q+G++ W+ I++++  gR +kqc++rw+++l
    Neem_1329_f_4 203 KGQWTPQEDKTLMRLVSQYGTKKWSQISKMLT-GRVGKQCRERWYNHL 249
                      799****************************9.*************97 PP
2Myb_DNA-binding52.61e-16255297145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT++Ed +l++a+k+ G++ W+ Iar++  gRt++ +k++w+
    Neem_1329_f_4 255 KDSWTEDEDIILIQAHKEVGNR-WAEIARRLR-GRTENTIKNHWN 297
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.965198253IPR017930Myb domain
SuperFamilySSF466893.26E-30201296IPR009057Homeodomain-like
SMARTSM007173.1E-15202251IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-27204256IPR009057Homeodomain-like
PfamPF139211.1E-18206264No hitNo description
CDDcd001675.03E-14206249No hitNo description
SMARTSM007177.0E-16254302IPR001005SANT/Myb domain
PROSITE profilePS5129421.109254304IPR017930Myb domain
CDDcd001671.08E-12257300No hitNo description
Gene3DG3DSA:1.10.10.601.8E-20257302IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MEFDSSFRDD YPFLASLFSD NLFKSDLENG FSFLENSSSK GLFHNLHTSV DHGPISECFS  60
SPDQFNRFST EGSSKNPSFG ISTPSFDAIE AYTNRVSGSG IGFSSTHLMP NGVNEVLHGS  120
ESGRFWDYSQ NFSAQPASET QIYQPVMNYP QCGSSSTARL PDEVSCITGE NAYHQDQKAD  180
QKRCNRMHVR KGRKLPKRNS IIKGQWTPQE DKTLMRLVSQ YGTKKWSQIS KMLTGRVGKQ  240
CRERWYNHLK PDIKKDSWTE DEDIILIQAH KEVGNRWAEI ARRLRGRTEN TIKNHWNATK  300
RRQQSKRKHK DRTPRSNLLQ NYIKTVTSPP STRKKKGKAH AASNISDQVV KTLPPTPQTQ  360
QVEISSDFTP SEWQVPAYDP NDATGFSYET SMLSDGYIFR SALDEVPSGS IVESNLDFEI  420
PTEIDSNYMP EEVTREMDLM VMVYKGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-432013032104C-Myb DNA-Binding Domain
1msf_C1e-432013032104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180197QKRCNRMHVRKGRKLPKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446542.10.0transcription factor MYB118
TrEMBLV4U1M70.0V4U1M7_9ROSI; Uncharacterized protein
STRINGXP_006446542.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.16e-76myb domain protein 118