PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_13164_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 609aa    MW: 66630.4 Da    PI: 5.1668
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_13164_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.55.2e-1312385971374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++c ea+++++l+la+a++++++ la  ++ +m ++  +f+eA+a+rl++        l++++  +++ s+ l ++  f+e++P+lkf+h
  Neem_13164_f_1 238 LVHALMACGEAIQQNNLTLAEAFVKQIRFLAVAQAGAMGKVGIFFAEAIARRLYG--------LRAQNPIDDSLSDLLEMQ--FYETCPYLKFAH 322
                     689****************************************************........555555544477776664..************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+eg++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+++g++La++Ae+++v+fe++ +v+++l+dl+
  Neem_13164_f_1 323 FTANQAILEAFEGKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNRDHLQQVGWKLAQLAETIHVEFEYRGFVCNSLADLD 417
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                      ++L+++p   +a+aVn+v++lh++l+++++++     v ++vks++P+++++veqea+hn++ Fl+rf eal+yys++fdsle ++  +s ++ 
  Neem_13164_f_1 418 ASMLELRPneVDAVAVNSVFELHKVLARPGAMDR----VFSFVKSIKPDIFTLVEQEANHNGPVFLDRFNEALHYYSTMFDSLEGSV--NSPDK- 505
                     ********55569*************99999888....************************************************7..55555. PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ +++lg++i+nvvaceg +r+erhe l +Wr r+++aGF p++l+++a kqa+ ll+ ++ ++gy+vee++g+l+lgW +rpL+++SaWr
  Neem_13164_f_1 506 TMTEAYLGKQICNVVACEGVDRVERHEPLTQWRTRFSSAGFVPAHLGSNAFKQASVLLALFAgGEGYKVEENNGCLTLGWYTRPLIATSAWR 597
                     555566*************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120414.1E-3537104IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.5E-3137110No hitNo description
PROSITE profilePS5098564.366212576IPR005202Transcription factor GRAS
PfamPF035141.8E-128238597IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MKREHHQLDP LPGPSSSSGK GKIWEDEHSL QPDGGMDELL AVLGYNVKAS DMAEVAQKLE  60
QLEEVMGAAQ EDGFSHLASE TIHYDPSNLA TWLESMLSEF NPGPSLDPLP LPAPAPIPAP  120
AAATAPPPPP PFDDSAFIAP AESSTLTSID FPSCSSDYDL KAIPGKAMYS TNTHQAQIQT  180
PSRTHFDSSS PSITSSVREN KRLKTSPTEQ LYPPAQSAAT ESTRPIILAD SQENGIRLVH  240
ALMACGEAIQ QNNLTLAEAF VKQIRFLAVA QAGAMGKVGI FFAEAIARRL YGLRAQNPID  300
DSLSDLLEMQ FYETCPYLKF AHFTANQAIL EAFEGKKRVH VIDFSMNQGM QWPALMQALA  360
LRPGGPPAFR LTGIGPPAPD NRDHLQQVGW KLAQLAETIH VEFEYRGFVC NSLADLDASM  420
LELRPNEVDA VAVNSVFELH KVLARPGAMD RVFSFVKSIK PDIFTLVEQE ANHNGPVFLD  480
RFNEALHYYS TMFDSLEGSV NSPDKTMTEA YLGKQICNVV ACEGVDRVER HEPLTQWRTR  540
FSSAGFVPAH LGSNAFKQAS VLLALFAGGE GYKVEENNGC LTLGWYTRPL IATSAWRLAS  600
KPAVTHRVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5723359614378Protein SCARECROW
5b3h_A4e-5723359613377Protein SCARECROW
5b3h_D4e-5723359613377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469195.10.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2H5Q2Z20.0A0A2H5Q2Z2_CITUN; Uncharacterized protein
STRINGXP_006469195.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein