PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1311_f_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 41219.5 Da PI: 8.121 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.7e-53 | 11 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+ +yL+kkv+++++++ ++i++vdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk +l++ Neem_1311_f_4 11 LPPGFRFHPTDEELILHYLRKKVASTPFPV-SIIADVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKIILASs 105 79****************************.89***************988899***************************************999 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 +e++g+kk Lvfykgr pkg+kt+W+mheyrl Neem_1311_f_4 106 favaggAQENIGVKKALVFYKGRPPKGVKTNWIMHEYRL 144 9999887788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-64 | 7 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.871 | 11 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-28 | 12 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MVYMKNPESA LPPGFRFHPT DEELILHYLR KKVASTPFPV SIIADVDIYK FDPWELPAKA 60 AFGEKEWYFF SPRDRKYPNG ARPNRAAASG YWKATGTDKI ILASSFAVAG GAQENIGVKK 120 ALVFYKGRPP KGVKTNWIMH EYRLAESPNN FNYRRPMRPK DSSMRLDDWV LCRIYRKSHV 180 SSPPSAATPS DQDQEEEEDQ FIQDTLLPIL KTPPSNNTSL HPQKSSSFSN LLDAMDYTML 240 SNFLSENQTN HTGLESTPPF SSGILDQQPP FSNGINTSCT SSFFLQKLPQ LNSSPVPTME 300 NKLKRPHPNI DETENILHHP SKKFINSCSF TNSTEQPDPH YSFLHQSFLN QQLLLSPHLH 360 FQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-72 | 10 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-72 | 10 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-72 | 10 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-72 | 10 | 177 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-72 | 10 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-72 | 10 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-72 | 10 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-72 | 10 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-72 | 10 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-72 | 10 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-72 | 10 | 177 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-72 | 10 | 177 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-72 | 10 | 177 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-72 | 10 | 177 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU947509 | 9e-32 | KU947509.1 Toxicodendron vernicifluum microsatellite c15344 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443351.1 | 0.0 | NAC transcription factor 47 | ||||
Refseq | XP_006479050.1 | 0.0 | NAC transcription factor 47 | ||||
Swissprot | Q84TD6 | 1e-122 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A2H5QN54 | 0.0 | A0A2H5QN54_CITUN; Uncharacterized protein | ||||
STRING | XP_006479050.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443351.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-120 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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