PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_13109_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 749aa MW: 83329.8 Da PI: 7.0405 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24 | 7e-08 | 82 | 106 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC f G C+ G++C+FaHg Neem_13109_f_2 82 FKTRLCAKFKH-GSCRNGENCNFAHG 106 69*******99.*************9 PP | |||||||
2 | zf-CCCH | 28.3 | 2.9e-09 | 151 | 174 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yGdrC+F H Neem_13109_f_2 151 KMKLCKKFYNGEECPYGDRCNFLH 174 789*******66************ PP | |||||||
3 | zf-CCCH | 34.5 | 3.5e-11 | 227 | 252 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + + G+C++G++C+FaHg+ Neem_13109_f_2 227 WKTKLCTKWTQ-GQCPFGEKCHFAHGQ 252 8**********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-14 | 80 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-7 | 80 | 112 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-5 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.385 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.2E-6 | 82 | 106 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 149 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-7 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-9 | 151 | 175 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-7 | 151 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-15 | 222 | 256 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-9 | 223 | 256 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-6 | 226 | 252 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.939 | 226 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 227 | 252 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF09296 | 4.4E-10 | 388 | 503 | IPR015375 | NADH pyrophosphatase-like, N-terminal |
SuperFamily | SSF55811 | 8.39E-41 | 490 | 679 | IPR015797 | NUDIX hydrolase domain-like |
Gene3D | G3DSA:3.90.79.10 | 2.6E-46 | 503 | 668 | IPR015797 | NUDIX hydrolase domain-like |
Pfam | PF09297 | 1.7E-6 | 507 | 538 | IPR015376 | Zinc ribbon, NADH pyrophosphatase |
PROSITE profile | PS51462 | 18.238 | 539 | 680 | IPR000086 | NUDIX hydrolase domain |
CDD | cd03429 | 6.79E-63 | 543 | 727 | No hit | No description |
Pfam | PF00293 | 4.3E-18 | 544 | 668 | IPR000086 | NUDIX hydrolase domain |
PRINTS | PR00502 | 1.9E-5 | 570 | 584 | IPR020476 | NUDIX hydrolase |
PROSITE pattern | PS00893 | 0 | 575 | 596 | IPR020084 | NUDIX hydrolase, conserved site |
PRINTS | PR00502 | 1.9E-5 | 584 | 599 | IPR020476 | NUDIX hydrolase |
Gene3D | G3DSA:3.90.79.10 | 2.6E-46 | 708 | 727 | IPR015797 | NUDIX hydrolase domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016787 | Molecular Function | hydrolase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MAPELHSYSV GNSDAIGVWP QYPVSNEQQC DRHSQFDQQP PFKRPRNFED NESNSSSYPP 60 MNPRMNPSVN PPVNKGTSSI FFKTRLCAKF KHGSCRNGEN CNFAHGVEDL RQPPPNWQEL 120 VGGGGGGGGG RLEEDRSSGG TWDDDQKIIH KMKLCKKFYN GEECPYGDRC NFLHEDPSKF 180 RDDLGRYRES SAISIGTTGP SVTQGSCSNQ SEVNRPVNNT SIKPVYWKTK LCTKWTQGQC 240 PFGEKCHFAH GQAELQVIGG RTEGEVVNPG LVPVRPQLVP ANESSPTTML PTLNKEGQGK 300 QCLFKFKEYD KRVFGNPRSY RLQAGKLTWL VGCGLWRVDK CNPIRSKTPN STDPFSPTSA 360 LESLKTRLLD NTHQQQQQNS SSSPDFKVLP LRKGRPLAYS CPGETAPLWY LAWISLADCK 420 TLLENSGAEL SEDSLVYLGS RSEDDVVYWA IDVSADSGLV SELGSRQCCF VELRTLMVAT 480 DWADERAMGE LAVAGHARAL LEWHNLSQFC GHCGEKTIPR EAGSRKQCSN ALCNKRIYPR 540 VDPVVIMLVV DRENDRVLLS RQSRFVPRMW SCLAGFIEPG ESLEEAVRRE TWEETGIEVG 600 EVVYHSSQPW PGVTSAHALF SNVGPNSMPC QLMVGFFAYA KSLEINVDKK ELEDAQWHTR 660 EDVKKALTFA EYKKAQRTAA AKVEQICKGV EKGQSLAADF NVESGELAPM FIPGPFAIAH 720 HLISSWVYQD GPGGVQFRKE SFSGSMSNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6o3p_A | 1e-45 | 442 | 727 | 99 | 335 | Peroxisomal NADH pyrophosphatase NUDT12 |
6o3p_B | 1e-45 | 442 | 727 | 99 | 335 | Peroxisomal NADH pyrophosphatase NUDT12 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the hydrolysis of some nucleoside diphosphate derivatives. Has a high affinity for NADPH compared with that for NADH. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450979.1 | 0.0 | nudix hydrolase 19, chloroplastic | ||||
Swissprot | Q94A82 | 0.0 | NUD19_ARATH; Nudix hydrolase 19, chloroplastic | ||||
TrEMBL | A0A498KEG2 | 0.0 | A0A498KEG2_MALDO; Uncharacterized protein | ||||
STRING | XP_006450979.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 6e-88 | C3H family protein |