PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_12973_f_5

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 321aa MW: 35894.7 Da PI: 8.1287

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_12973_f_5	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104	8.4e-33	181	238	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+ Neem_12973_f_5 181 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCTVKKRVERSYQDPTIVITTYEGQHNHH 238 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-34	165	240	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-29	173	240	IPR003657	WRKY domain
PROSITE profile	PS50811	32.328	175	240	IPR003657	WRKY domain
SMART	SM00774	1.2E-37	180	239	IPR003657	WRKY domain
Pfam	PF03106	1.4E-25	181	238	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MSNHEKKASY HYDPFDCNPQ GFNRLGFNFF QDNPSMYNPP TPSENLQAFD PTSYMSFTDC 60 LHGSMDYSSL SRAFDMSCSS SEVITPTMEE SSKKTATVAG ESTAMTTSEN NNPSTPNSSV 120 SSSSNEAGGN EDSGNNKKDK HQKGQEDGDE KSKKVNKPKK EKKQREPRFA FLTKSEIDHL 180 EDGYRWRKYG QKAVKNSPYP RSYYRCTSQK CTVKKRVERS YQDPTIVITT YEGQHNHHCP 240 ATLRGNAAGM LPPSLLASAS MGSSFPHELL SHLLPSTNNN LQGVPSSMYY QNLAPQQQLG 300 QVPDYGLLQD LVPSFIHKQK P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-28	173	241	10	78	Probable WRKY transcription factor 4
2lex_A	2e-28	173	241	10	78	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF708981	2e-33	JF708981.1 Dimocarpus longan WRKY transcription factor 29-2 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437166.1	1e-155	probable WRKY transcription factor 28
Refseq	XP_006484858.1	1e-155	probable WRKY transcription factor 28
TrEMBL	A0A2H5QUL4	1e-154	A0A2H5QUL4_CITUN; Uncharacterized protein
TrEMBL	V4TKS7	1e-154	V4TKS7_9ROSI; Uncharacterized protein
STRING	XP_006484858.1	1e-154	(Citrus sinensis)
STRING	XP_006437166.1	1e-154	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	5e-57	WRKY DNA-binding protein 28