PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_12847_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | G2-like | ||||||||
Protein Properties | Length: 261aa MW: 30071.1 Da PI: 10.0621 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.3 | 3.1e-32 | 38 | 91 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+++AtPk +l++m+v gLt++hvkSHLQ+YR+ Neem_12847_f_1 38 PRLRWTPDLHLSFVHAVERLGGEDRATPKMVLQIMDVRGLTISHVKSHLQMYRS 91 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.584 | 34 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-31 | 34 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-15 | 36 | 92 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-24 | 38 | 92 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-7 | 39 | 90 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MKKKADSAES SCSQSSSNRP EISLKSPGVR PYVRSKMPRL RWTPDLHLSF VHAVERLGGE 60 DRATPKMVLQ IMDVRGLTIS HVKSHLQMYR SMKHEQMIQE AARAAKRNVN SNKVLDPIYC 120 HQNHHLKYLN LMNNNAQRNQ SFRILHYSES LAHLRNNPNV PAYWEEKQHM WIGKEELITN 180 TEMEQRSNSY FIFKDLLKSY TAQKEQEKLS KAYQNSSEND VSREGSLSLS LASKVSPPLR 240 KLSKAYQNSS ENDVSLDLTL A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-20 | 39 | 94 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-20 | 39 | 94 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-20 | 39 | 94 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-20 | 39 | 94 | 3 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021598244.1 | 1e-71 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2H5N4R3 | 3e-71 | A0A2H5N4R3_CITUN; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_021436m | 4e-71 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 2e-33 | G2-like family protein |