PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11885_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 405aa MW: 44577.8 Da PI: 9.6033

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11885_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.4	1e-14	124	211	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W+ev++ + +++ ++++pk qCk++++ ++k+yk +k+ ++ + s++++f++l+ Neem_11885_f_2 124 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKIMSG--GGASKWVFFEKLD 211 7***********************************866677776654449*************99997..66679****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.7E-25	122	213	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010431	Biological Process	seed maturation

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MAFSVNLHSQ INMLLVHLPS RQHDIHAGDG VFPSPSNHIL PPQPSSSSLL PPPDLRDLME 60 EEDEIQSHPS PTATGSPSSQ SPANGRITVT VAAAPPIQIQ QQQNSLALAL PPQRNGGGGG 120 REDCWSEGAT AVLIDAWGER YLELSRGNLK QKHWKEVADI VSSREDYTKT PKTDIQCKNR 180 IDTVKKKYKL EKAKIMSGGG ASKWVFFEKL DQLIGPTAKN SSGSSRVPMG IPVGMRNQMV 240 VATKNQQQSN VFGSGGQKIQ LRKRGGVAAP VETESEESGE ESADSMDSFP PEKRQRVVGN 300 TSKGKKEKDK SGWGDSVRML TQAILKFGEA YEQAESAKLQ QVVEMEKQRM KFAKELELQR 360 MQPAIFPGRG CGDGIARYKW LRQLLLLISH LCKTVYLVKA MLQDI

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MAFSVNLHSQ INMLLVHLPS RQHDIHAGDG VFPSPSNHIL PPQPSSSSLL PPPDLRDLME  60
EEDEIQSHPS PTATGSPSSQ SPANGRITVT VAAAPPIQIQ QQQNSLALAL PPQRNGGGGG  120
REDCWSEGAT AVLIDAWGER YLELSRGNLK QKHWKEVADI VSSREDYTKT PKTDIQCKNR  180
IDTVKKKYKL EKAKIMSGGG ASKWVFFEKL DQLIGPTAKN SSGSSRVPMG IPVGMRNQMV  240
VATKNQQQSN VFGSGGQKIQ LRKRGGVAAP VETESEESGE ESADSMDSFP PEKRQRVVGN  300
TSKGKKEKDK SGWGDSVRML TQAILKFGEA YEQAESAKLQ QVVEMEKQRM KFAKELELQR  360
MQPAIFPGRG CGDGIARYKW LRQLLLLISH LCKTVYLVKA MLQDI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00356	DAP	Transfer from AT3G14180	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006465837.1	1e-123	trihelix transcription factor ASIL2
Swissprot	Q9LJG8	2e-74	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A067DRV5	1e-121	A0A067DRV5_CITSI; Uncharacterized protein
TrEMBL	V4UKU3	1e-121	V4UKU3_9ROSI; Uncharacterized protein
STRING	XP_006465837.1	1e-122	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6262	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	2e-66	sequence-specific DNA binding transcription factors