PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1177_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 544aa    MW: 61143.3 Da    PI: 6.3055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1177_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-1632122199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv+       s  l lp kf+ + ++    ++++ led+sg++Wev++  ++  g+  +++GW+ F   ++L+ gDf+vF+++  s f  vv++
  Neem_1177_f_3  32 FFKVM--IGKQFSEVLFLPPKFFPTVSSL--IGQKILLEDSSGQQWEVTV--SNLNGALAFKQGWNAFSVHHRLEIGDFLVFHYIMGSHF--VVHI 119
                    66666..4444556699999999888544..5679***************..999999**************************977888..9999 PP

                    E-S CS
             B3  97 frk 99 
                    ++k
  Neem_1177_f_3 120 YNK 122
                    876 PP
2B333.38.4e-114835421882
                    --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                    lp +f    g  k+e + + l+d++ r W v +    ks   +lt+GW+ F kan++k gD +vF
  Neem_1177_f_3 483 LPTSFK---GRFKRERMVVLLRDPDMRIWPVLY--HEKSAFKILTSGWEAFSKANNIKLGDECVF 542
                    444443...3335677899**************..999999***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2025125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-2029125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.71730123IPR003340B3 DNA binding domain
CDDcd100172.41E-1631121No hitNo description
SMARTSM010199.3E-832123IPR003340B3 DNA binding domain
PfamPF023623.8E-1332122IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053462544IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-11464542IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-10483543No hitNo description
SuperFamilySSF1019362.55E-12483543IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-8483542IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MACKLEACAE CTQKCLLIHG RKRNSSPVIT SFFKVMIGKQ FSEVLFLPPK FFPTVSSLIG  60
QKILLEDSSG QQWEVTVSNL NGALAFKQGW NAFSVHHRLE IGDFLVFHYI MGSHFVVHIY  120
NKTGCEKIDF SVNRNQRKRV KPTTNSTVED GPYYATDKDS MNKQGSSTPV SSGSHKEINH  180
TESQCEMNDV EKVIAKVISN CEISHDSPKV LSKAECFEDL YYFVDRDFGE QVENRCLVFD  240
LSRFEMSENN CGKDKSNEFK VVDEHPQHDD ASMRSQMEDV LVNKYPVVEE VVNRVVPSDA  300
SDFETIKNNN VEMMKKLVTL SGNCNSKFSE HHQFATAIEP ANDGGNSSNI SNGVFKRCHI  360
AEEESIMQSK SKPEIDQVTV SQMDCTLFAD IDQSVPLRII GKSGTSSIPF ISRIQNCQLG  420
KLTPLFMVDC SQSSDLFGRE NTVTQVVKTE SQDLASTSSS TAVSISCVTT SVSQHFLELP  480
TCLPTSFKGR FKRERMVVLL RDPDMRIWPV LYHEKSAFKI LTSGWEAFSK ANNIKLGDEC  540
VFWS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440024.21e-160uncharacterized protein LOC18050177
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1853758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-12B3 family protein