PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11777_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

EIL

Protein Properties

Length: 376aa MW: 44171.9 Da PI: 6.2938

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11777_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	330.5	4.2e-101	48	301	1	263
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 eelkkrmwkd+m++ +lke+++ e+ ++ ++++e++rrkkmsraQ +iLkY +k+me+cnaqGfvY i+pekgkpv g+sdsL +WW Neem_11777_f_2 48 EELKKRMWKDRMRMHKLKEKREI--EE-------SELSTREEASRRKKMSRAQTSILKYVVKIMEACNAQGFVYAIVPEKGKPVIGSSDSLHKWW 133 8************88887764..23.......3345689************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT..--T CS EIN3 96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg..lsk 188 ke+++fd +p+ai+ky+++ + + +q+++ss h l++l D tlgSL salmqh ppqrrfp e+g +pPWWPtGke wwge+g + + Neem_11777_f_2 134 KEQIRFDHYAPVAIAKYKPAFELHR--ELNQSSPSSFVHLLHQLEDNTLGSLVSALMQHWVPPQRRFPIERGSAPPWWPTGKERWWGEQGihMIE 226 *************87666654..3335689****************************************************76677 PP T--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX CS EIN3 189 dqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah 263 ++g+ppyk +hdlkkawkvsvL+ ikh+sp++++ir l+ +sk lq km+ake++++++v+nqee+++ Neem_11777_f_2 227 EHGPPPYKRSHDLKKAWKVSVLAGIIKHTSPNLNRIRSLVSESKFLQYKMMAKEKDTWCKVVNQEEALLPAPEEA 301 888*************************************************************987544433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	3.8E-100	48	292	No hit	No description
Gene3D	G3DSA:1.10.3180.10	8.9E-57	164	295	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	9.94E-50	169	294	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MVKIYEERDA VNRGEEEEDE DEEISYEELK KRMWKDQEED EDEEISYEEL KKRMWKDRMR 60 MHKLKEKREI EESELSTREE ASRRKKMSRA QTSILKYVVK IMEACNAQGF VYAIVPEKGK 120 PVIGSSDSLH KWWKEQIRFD HYAPVAIAKY KPAFELHREL NQSSPSSFVH LLHQLEDNTL 180 GSLVSALMQH WVPPQRRFPI ERGSAPPWWP TGKERWWGEQ GIHMIEEHGP PPYKRSHDLK 240 KAWKVSVLAG IIKHTSPNLN RIRSLVSESK FLQYKMMAKE KDTWCKVVNQ EEALLPAPEE 300 AGKQEETPHF NKDKHVINME LAKADEKITY NIDLIEDSGD GSGSGSSVED YANASYWVNG 360 NNVDYIYSRH EWRIIK

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MVKIYEERDA VNRGEEEEDE DEEISYEELK KRMWKDQEED EDEEISYEEL KKRMWKDRMR  60
MHKLKEKREI EESELSTREE ASRRKKMSRA QTSILKYVVK IMEACNAQGF VYAIVPEKGK  120
PVIGSSDSLH KWWKEQIRFD HYAPVAIAKY KPAFELHREL NQSSPSSFVH LLHQLEDNTL  180
GSLVSALMQH WVPPQRRFPI ERGSAPPWWP TGKERWWGEQ GIHMIEEHGP PPYKRSHDLK  240
KAWKVSVLAG IIKHTSPNLN RIRSLVSESK FLQYKMMAKE KDTWCKVVNQ EEALLPAPEE  300
AGKQEETPHF NKDKHVINME LAKADEKITY NIDLIEDSGD GSGSGSSVED YANASYWVNG  360
NNVDYIYSRH EWRIIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	2e-48	167	294	1	126	Protein ETHYLENE INSENSITIVE 3
4zds_B	2e-48	167	294	1	126	Protein ETHYLENE INSENSITIVE 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632559.1	1e-122	putative ETHYLENE INSENSITIVE 3-like 4 protein
Swissprot	Q9FJQ5	1e-109	EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBL	A0A2P5RM40	1e-121	A0A2P5RM40_GOSBA; Uncharacterized protein
STRING	XP_007159632.1	1e-119	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5879	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65100.1	1e-98	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]