PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11684_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 495aa    MW: 54887.9 Da    PI: 5.8071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11684_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12318363454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Neem_11684_f_1 318 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 363
                     799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-5526212IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.44E-17306376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.015314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-13317364No hitNo description
Gene3DG3DSA:4.10.280.103.2E-16318378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-10318363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-16320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEDLIISPSS SSSLVSLTPE TPPPTLQQRL QFIVQSQPDC WAYAIFWQTS NDDHGHLFLA  60
WGDGHYQGTK DTSPKISNVG NLPMPALNLE RKRVIKGIQQ SFIGDHQTHE IDMSMMNGSD  120
VTDPEWFYVM SVARSFSAGD GIPGRALSTG SLVWLTGSHE MQFYNCERAK EAQMHGIETF  180
VCIPTSCGVL ELGSCDVIRE NWGLVQQVKS LFSSDLTALV TKQLNPTPGP IQFLDRNISF  240
ADIGIIAGIQ EEDTTPEEKK NKQQKEAKES TVKPGQPSYV DSEHSDSDCP LLTVSNIEKR  300
TPKKRGRKPG LGRETPLNHV EAERQRREKL NHRFYALRAV VPNVSRMDKA SLLSDAVSYI  360
NELKGKIDEL ESQLQRESKK VKLEISDNMD NQSTTTSVDQ TRASSGSGSG SGGGSNLEVE  420
VKIVGKDAMI RVQSENVNYP AARVMSALRD LEFPVHHASM SCVNDLMLQD FVVRVPDGLR  480
TEDGLKSALL RRLEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-35192132193Transcription factor MYC3
4rqw_B1e-35192132193Transcription factor MYC3
4rs9_A1e-35192132193Transcription factor MYC3
4yz6_A1e-35192132193Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051457.20.0PREDICTED: transcription factor bHLH14
TrEMBLA0A061DS370.0A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRINGEOX956140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.14e-67NACL-inducible gene 1