PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11643_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 298aa    MW: 34156.7 Da    PI: 8.7803
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11643_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.45.2e-48141391128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF+Ptdeelv +yL+ k+ + +l++  +i+e++i+k++PwdLp    ++e+e yfFs+++ ky++g+r nrat+sgyWkatg dk++ls+
  Neem_11643_f_3  14 LPPGFRFQPTDEELVFQYLRCKIFSFPLPA-PIIPEINICKYDPWDLP---GNSEHERYFFSSKEAKYRNGNRVNRATASGYWKATGLDKQILSS 104
                     79***************************9.88***************...4467899***********************************99 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ vg+kktLvfy+g+ ++ ++tdW+mheyrl
  Neem_11643_f_3 105 smGNQMVGMKKTLVFYSGKPSHESRTDWIMHEYRL 139
                     888999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-529142IPR003441NAC domain
PROSITE profilePS5100550.27614220IPR003441NAC domain
PfamPF023653.3E-2515139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDRFQFVRDG MIRLPPGFRF QPTDEELVFQ YLRCKIFSFP LPAPIIPEIN ICKYDPWDLP  60
GNSEHERYFF SSKEAKYRNG NRVNRATASG YWKATGLDKQ ILSSSMGNQM VGMKKTLVFY  120
SGKPSHESRT DWIMHEYRLV SVGTTASSYP EPENSSQASF QTYIFPLMYN MLYFLRTTDA  180
TVPTVNLCMR NRSSYISLIG YLQNYMKEME NWVICRVFLK KRNVNDENIV QASKDTKRKS  240
NSVAAAQPQF FDFMMRDKMG LGPAISSSSS TSSFSGMSEV SSNQSENDDE GSSSSHIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-401213913140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485134.11e-103NAC domain-containing protein 83-like
TrEMBLA0A2H5PW651e-101A0A2H5PW65_CITUN; Uncharacterized protein
STRINGXP_006485134.11e-102(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2278134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-73NAC domain containing protein 83