PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11412_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 271aa MW: 30882.6 Da PI: 7.7229

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11412_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.1	3.7e-45	5	135	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 ppGfrF Pt+eelv++yL +k+ gk+ el++vi+ +++y++ePw+Lpk +++++ ++w+fF++r++++++g r++r+t+sgyWkatg+ v Neem_11412_f_1 5 PPGFRFYPTEEELVSFYLLNKLGGKRQELHRVIPVIKLYEIEPWHLPKlsgeQCQGDPEQWFFFAPRQEREERGGRPSRTTASGYWKATGSPSYV 99 8**************************99************656766666778******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s++++++g+kkt+vfykg++p+g+kt+W m+eyr+ Neem_11412_f_1 100 YSSDNRVIGVKKTMVFYKGKTPTGRKTKWKMNEYRA 135 ********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-48	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	48.8	4	159	IPR003441	NAC domain
Pfam	PF02365	2.5E-24	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MENRPPGFRF YPTEEELVSF YLLNKLGGKR QELHRVIPVI KLYEIEPWHL PKLSGEQCQG 60 DPEQWFFFAP RQEREERGGR PSRTTASGYW KATGSPSYVY SSDNRVIGVK KTMVFYKGKT 120 PTGRKTKWKM NEYRALEGAA NTAPPKLRHE FSLCRVYVNS GSFRAFDRRP LEAAARDKQP 180 HGDGASTSSP NNIMVHSDGF KTSLQDTTML HGDVATVSPQ DNMKVARTSS TETSYSGEDH 240 ADLPEIAVDR DWNGVDDLGL PLWDWEQLHW P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-36	5	162	21	171	NAC domain-containing protein 19
3swm_B	1e-36	5	162	21	171	NAC domain-containing protein 19
3swm_C	1e-36	5	162	21	171	NAC domain-containing protein 19
3swm_D	1e-36	5	162	21	171	NAC domain-containing protein 19
3swp_A	1e-36	5	162	21	171	NAC domain-containing protein 19
3swp_B	1e-36	5	162	21	171	NAC domain-containing protein 19
3swp_C	1e-36	5	162	21	171	NAC domain-containing protein 19
3swp_D	1e-36	5	162	21	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424204.1	1e-155	NAC domain-containing protein 90 isoform X1
Swissprot	Q9FMR3	8e-93	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A067F3S8	1e-155	A0A067F3S8_CITSI; Uncharacterized protein
STRING	XP_006487908.1	1e-156	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	8e-89	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]