PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11333_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 1003aa MW: 112132 Da PI: 9.3355

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11333_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	234	256	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t lC++fa+ G C++G+ C+F+H Neem_11333_f_1 234 TQLCKDFAA-GRCRRGSHCHFSHH 256 78*****.***********5 PP
2	zf-CCCH	19.2	2.2e-06	313	333	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ffa+ G C+ G C+F+H+ Neem_11333_f_1 313 PCKFFAA-GNCRNGKYCRFSHS 333 89999.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.7E-4	231	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.084	231	258	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.94E-5	233	256	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-4	234	256	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	234	256	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-4	308	334	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.023	308	335	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-5	311	333	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence Send to blast
MSGGRRKRNS KWDLKEDSQL SHEKVRDSAW PGKAVMSCHD KESRSGRFSP KVAGHNNVHK 60 WSGREADDII SSKHDLQSSY REPLLGSRGS RRDDSIDDYR ENFKAISTWD GDEGYNMRMS 120 PGVDDWRNQT RRRSPKNDWN RHHRSSIMNN VVYEIQYANW YMLVAPCDEL KQISSFIFLS 180 LNAICRSRSR SRSRSRSRSR SRSRSWNRSR SPVRGFRRES DVYGRSRGRA GVSTQLCKDF 240 AAGRCRRGSH CHFSHHSTHG YEDSWESRHR ESGAPKYSTP HESREYPIRS GRNREGSLER 300 RGEHEFRKSG DIPCKFFAAG NCRNGKYCRF SHSGQALVSP NRRSREDNSV RGHNSDDVDK 360 LWNGPKWNDA NTFSDAAKSS DEKYERMVAN RKSQDDRLVR NHNSDNVEKL WDGQPWGGTD 420 TFLDAAKLSE NQNDRMGAPG PRFTAWSRDD RLPHSLEDTA AHANQTVVGH EESEGNKMDT 480 LQSKIKSAQH MLTRQWLAMK KSKIKSAGVG MGASESGGRE NWLGDMEMSP DWNFTVKSSN 540 CAMNEDHGHI PRSSHSLPIS DTSVLCEQGI AREASVVLND PVTTIQPVIL DKSYLKQDIN 600 QRDSGGVALP RDKNGVGKTA LSPIDLNFSS NILPTQSYDR NVQSSSALPF STLNSIGQSQ 660 GAIPSEPSRV GNINNPQNNT ALQMEKLSNK PGIGDGNASQ FSSAIPTTQN MVSGEQLTQL 720 TNLSASLVQF LGNGQQLPQL YAALNSHNVM QVPSSANSEG PTAPDSAMSN QPNEVIISLK 780 QYDPLCDSVE LKKHDAVNTP GTLINPAGQK SHVDGKPNGG SGKTTDSSQL PKQLESDANR 840 KVSELSIGLA AEEDKKAQVE NKIPEENGKV QKTDEDDNDD KDDKAEKSKD KGIRAFKFAL 900 AEFVKELLKP TWKEGQINKD AYKNIVKKVV DKVIGTMQGA ANIPQTQEKI DQYLSFSKSK 960 LTKFVQLILL RVSLNLQAHI SCIVICVWME RVATDMIPEL AWL

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence Send to blast

MSGGRRKRNS KWDLKEDSQL SHEKVRDSAW PGKAVMSCHD KESRSGRFSP KVAGHNNVHK  60
WSGREADDII SSKHDLQSSY REPLLGSRGS RRDDSIDDYR ENFKAISTWD GDEGYNMRMS  120
PGVDDWRNQT RRRSPKNDWN RHHRSSIMNN VVYEIQYANW YMLVAPCDEL KQISSFIFLS  180
LNAICRSRSR SRSRSRSRSR SRSRSWNRSR SPVRGFRRES DVYGRSRGRA GVSTQLCKDF  240
AAGRCRRGSH CHFSHHSTHG YEDSWESRHR ESGAPKYSTP HESREYPIRS GRNREGSLER  300
RGEHEFRKSG DIPCKFFAAG NCRNGKYCRF SHSGQALVSP NRRSREDNSV RGHNSDDVDK  360
LWNGPKWNDA NTFSDAAKSS DEKYERMVAN RKSQDDRLVR NHNSDNVEKL WDGQPWGGTD  420
TFLDAAKLSE NQNDRMGAPG PRFTAWSRDD RLPHSLEDTA AHANQTVVGH EESEGNKMDT  480
LQSKIKSAQH MLTRQWLAMK KSKIKSAGVG MGASESGGRE NWLGDMEMSP DWNFTVKSSN  540
CAMNEDHGHI PRSSHSLPIS DTSVLCEQGI AREASVVLND PVTTIQPVIL DKSYLKQDIN  600
QRDSGGVALP RDKNGVGKTA LSPIDLNFSS NILPTQSYDR NVQSSSALPF STLNSIGQSQ  660
GAIPSEPSRV GNINNPQNNT ALQMEKLSNK PGIGDGNASQ FSSAIPTTQN MVSGEQLTQL  720
TNLSASLVQF LGNGQQLPQL YAALNSHNVM QVPSSANSEG PTAPDSAMSN QPNEVIISLK  780
QYDPLCDSVE LKKHDAVNTP GTLINPAGQK SHVDGKPNGG SGKTTDSSQL PKQLESDANR  840
KVSELSIGLA AEEDKKAQVE NKIPEENGKV QKTDEDDNDD KDDKAEKSKD KGIRAFKFAL  900
AEFVKELLKP TWKEGQINKD AYKNIVKKVV DKVIGTMQGA ANIPQTQEKI DQYLSFSKSK  960
LTKFVQLILL RVSLNLQAHI SCIVICVWME RVATDMIPEL AWL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	203	RSRSRSRSRSR
2	195	203	RSRSRSRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006464624.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X1
Refseq	XP_006464625.1	0.0	zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBL	A0A2H5Q1M2	0.0	A0A2H5Q1M2_CITUN; Uncharacterized protein
STRING	XP_006464624.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15764	9	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-09	C3H family protein