PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11313_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 340aa    MW: 37175.5 Da    PI: 6.0579
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11313_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17244277134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Neem_11313_f_1 244 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 277
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.2E-773330IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.543238274IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-16238288IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-15242275IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15242301No hitNo description
CDDcd002027.37E-14243290No hitNo description
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
PfamPF003202.3E-15244277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVGPNFMDEI DCGSFFDHID DLLDFPNEDI EAGLSSADCN SFPSIWPTQS ESLPGSDSVF  60
SNNSSTDLSA ELSVPYEDIV QLEWLSNFLD DSFSGGSLTI NNQESSSITK DDSSHNQFRT  120
SSPVSDLESS SSCSGDKTVL GSPENAAQGR RGRARSKRPR PPKFNPRPLV QLVSPTSSVT  180
ETRQQLNAPK GSSDSEGVAE SRLVIKVLNQ FNSVGKIKKK IRLSAPQVSD ENNQNPPPQA  240
VRKCMHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF VPSLHSNSHK  300
KVLEMRSKVC SKTAMAGNEK MISDLPELIP NNNNVAMEYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KRPRP
2215221KIKKKIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436436.10.0GATA transcription factor 8
RefseqXP_006485699.10.0GATA transcription factor 8
TrEMBLA0A2H5P2I50.0A0A2H5P2I5_CITUN; GATA transcription factor
TrEMBLV4TDM90.0V4TDM9_9ROSI; GATA transcription factor
STRINGXP_006485699.10.0(Citrus sinensis)
STRINGXP_006436435.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-46GATA family protein