PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11273_f_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 423aa MW: 46151.6 Da PI: 7.9867 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.4 | 1.2e-08 | 84 | 106 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lCr++ + G C yG++Ck+ H+ Neem_11273_f_6 84 EKLCRNWVQ-GNCIYGEKCKYLHS 106 579******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.145 | 24 | 50 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.1 | 24 | 49 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 81 | 108 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-6 | 82 | 106 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 83 | 107 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 84 | 106 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-7 | 85 | 102 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 4.4E-22 | 103 | 272 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 3.5E-5 | 112 | 151 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 6.5E-4 | 115 | 151 | IPR001680 | WD40 repeat |
SuperFamily | SSF50998 | 1.88E-36 | 116 | 419 | IPR011047 | Quinoprotein alcohol dehydrogenase-like superfamily |
PROSITE profile | PS50082 | 13.516 | 119 | 160 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 12.526 | 119 | 160 | IPR017986 | WD40-repeat-containing domain |
PROSITE pattern | PS00678 | 0 | 138 | 152 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 70 | 191 | 228 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 10.522 | 198 | 383 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 0.5 | 235 | 272 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 6.7E-21 | 281 | 417 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 6.4E-4 | 290 | 327 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.049 | 292 | 326 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.64 | 331 | 374 | IPR001680 | WD40 repeat |
SMART | SM00320 | 4.5 | 377 | 414 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MDLHAHGGNK RVFNRLGGGP STAENKQKVC NYWRAGKCNR FPCPYLHREL PSPPGAANGT 60 ATKRFANNTW GRLGNNNRSV IKTEKLCRNW VQGNCIYGEK CKYLHSWTLG EGFRLLTQLE 120 GHQKVVSGIT LPSGSDKLYS GSKDETVRVW DCASGQCVGV INIGGEVGCM ISEGPWIFVG 180 VTNFVKAWNT QTNTDLSLSG PVGQVYAMAV GNDLLFAGTQ EGAILAWKFN AATNCFEPAA 240 SLKGHNLAVV SLVVGANRLY SGSMDNSVRL VNKLPTEILQ STVVVWSLET LQCIQTLMEH 300 TSVVMSLLCW DQFLLSCSLD KTIKVWVATE SGNLEVTYTH NEEHGVLTLC GMPDSEGKPV 360 LLCACNDNSV RFYDLPSFSE RGKILSKQEI RAIQLGPGGL FFTGDGTGQV RVWQWCNGPT 420 ATS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 1e-18 | 95 | 420 | 4 | 320 | Tako8 |
6g6n_A | 1e-18 | 95 | 420 | 4 | 320 | Tako8 |
6g6n_B | 1e-18 | 95 | 420 | 4 | 320 | Tako8 |
6g6n_C | 1e-18 | 95 | 420 | 4 | 320 | Tako8 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ635167 | 1e-32 | AJ635167.1 Mangifera indica microsatellite DNA, locus mMiCIR005. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006490309.1 | 0.0 | zinc finger CCCH domain-containing protein 48 | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A067F1Z0 | 0.0 | A0A067F1Z0_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NM58 | 0.0 | A0A2H5NM58_CITUN; Uncharacterized protein | ||||
STRING | XP_006490309.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1839 | 28 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |