PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11233_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 375aa MW: 40683.7 Da PI: 7.4977 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 96 | 120 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ Neem_11233_f_1 96 FKTKLCCKFRN-GTCPYITNCNFAHS 120 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.5 | 3.6e-06 | 171 | 196 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Neem_11233_f_1 171 YKGRHCKKFYTEEGCPYGDNCTFLHD 196 77888********************7 PP | |||||||
3 | zf-CCCH | 41.7 | 1.9e-13 | 255 | 280 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Neem_11233_f_1 255 WKTRICNKWELTGYCPFGNKCHFAHG 280 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-14 | 93 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.16E-8 | 93 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 95 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.141 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-5 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-9 | 169 | 198 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 169 | 198 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 170 | 198 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.058 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-17 | 249 | 284 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-10 | 251 | 285 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.441 | 254 | 282 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-9 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 255 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSYARDSSEN VVHVIVGNGP PENWLPNSND SSVWATEDEY RVWNNNHDNS ADTPSNSNSN 60 YQSQTRSNSE QPPNKKSRNS SQDVNSKSKA IGKMFFKTKL CCKFRNGTCP YITNCNFAHS 120 IEELRRPPPN WQEIVAAHEE DRAVPNEAPR EEFQIPSLGS TNFGVESQRS YKGRHCKKFY 180 TEEGCPYGDN CTFLHDEQSK NRESVAISLG PGGYGGSGGG GGGGVAGAGA GAGAAAVGAC 240 GGNNSGASNV KPSNWKTRIC NKWELTGYCP FGNKCHFAHG AQELHRYGGG LVESENKDSS 300 TAPSDLKLVG VPLKTPVDTV VASVTSVPHA DAYHMGVPSQ RTSIVIQRPG QRSHQKWKGP 360 DKISRIYGDW IDDIE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445697.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Refseq | XP_006485547.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q9LQM3 | 1e-137 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A2H5QXC9 | 0.0 | A0A2H5QXC9_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TZ87 | 0.0 | V4TZ87_9ROSI; Uncharacterized protein | ||||
STRING | XP_006485547.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006445697.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-138 | C3H family protein |