PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11078_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | C3H | ||||||||
Protein Properties | Length: 323aa MW: 36533.4 Da PI: 6.7806 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.4e-12 | 185 | 210 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Neem_11078_f_1 185 YQPDICKDYKETGYCGYGDSCKFMHD 210 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.7E-9 | 182 | 215 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 184 | 211 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 184 | 212 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 185 | 215 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-10 | 185 | 210 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 3.6E-13 | 251 | 303 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.17E-12 | 261 | 304 | No hit | No description |
Pfam | PF13920 | 1.3E-8 | 261 | 303 | No hit | No description |
PROSITE profile | PS50089 | 10.35 | 262 | 300 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 3.58E-7 | 262 | 303 | No hit | No description |
SMART | SM00184 | 5.8E-4 | 262 | 299 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 277 | 286 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAESGSGEAQ QSEQICNFFR KPTRNKNIRK RTINEDEDED STESSVLQNQ RKASKPDSKL 60 YFSTGSSESA AAADSSTETE KPIFQFESSK EIQVQHDNRA TATLETETEF SRDSRALREK 120 VLKRSEEALK GKSSVDEKLY KGMHGYVDHK AGFRREHTVS SEKAGGAHGP LRASAHIRVT 180 ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EKEWEEAEKA RKRNLALGGG 240 DPDEGGGDQS DEDDDDSLPF ACFICRKPFV DPVVTKCKHY FCEHCALKHH AKNKKCFVCN 300 QPTLGIFNAA HEIRKKMAEE DRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 2e-63 | 1 | 317 | 1 | 317 | RING finger protein 113A |
5z58_M | 2e-63 | 1 | 317 | 1 | 317 | RING finger protein 113A |
6ff4_t | 2e-63 | 1 | 317 | 1 | 317 | RING finger protein 113A |
6ff7_t | 2e-63 | 1 | 317 | 1 | 317 | RING finger protein 113A |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439792.1 | 0.0 | zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_006476759.1 | 0.0 | zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q8GX84 | 1e-169 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A067G2P3 | 0.0 | A0A067G2P3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NFD5 | 0.0 | A0A2H5NFD5_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TI41 | 0.0 | V4TI41_9ROSI; Uncharacterized protein | ||||
STRING | XP_006476759.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006439792.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11099 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-144 | C3H family protein |