PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11021_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 521aa MW: 61014.3 Da PI: 7.7554

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11021_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78	1.9e-24	58	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAke GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++ ++++++++w++ ++eleHnH+++ Neem_11021_f_3 58 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIIIRLMDSKRWRIVEVELEHNHPVS 142 6*******************999*************99888.....9********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-22	58	143	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	6.5E-5	402	435	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.446	402	438	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	413	440	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MEEVCLNSEP LFDDGDEYEA DGDFREGQDD GAGETHLKKQ PSQPTVGLEF DSFDQAYDFY 60 NVYAKEQGFG IRVSNSWFRS KRKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIII 120 RLMDSKRWRI VEVELEHNHP VSPQIKRFYK SHKKMILAAR RAQPPPQPVT EIHTIKLYRT 180 AVVDAGCNGF PNVDEREGLT PVDLSKHLRV PEKLGGLKGY EAIKRQLSKA VYSSLKIAEF 240 ETAWADMIKQ HGLGDNKWLQ TLYDDRQRWV PVYLKDIFFA GMIPVQENES FNAFFDGYVH 300 KHTSFKEFVD KYDLALHRKH MKEAMADQES RNSCFELKTR CSFEVQLSKV YTKEIFKRFQ 360 SEVEGMYSCF NTRQVTARGP IITYIVKERV EVEGNEKEVR NYEVLYETSQ VDIRCICSLF 420 NYKGYLCRHA LNVLNYNGVE EIPSRYILPR WTKDFKCRGV LLHHDFNNVD MYNPIYWYHH 480 LYRRAIPVLE QGAQSQDHYK VALHELEELM NRFNLVEDSR V

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MEEVCLNSEP LFDDGDEYEA DGDFREGQDD GAGETHLKKQ PSQPTVGLEF DSFDQAYDFY  60
NVYAKEQGFG IRVSNSWFRS KRKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIII  120
RLMDSKRWRI VEVELEHNHP VSPQIKRFYK SHKKMILAAR RAQPPPQPVT EIHTIKLYRT  180
AVVDAGCNGF PNVDEREGLT PVDLSKHLRV PEKLGGLKGY EAIKRQLSKA VYSSLKIAEF  240
ETAWADMIKQ HGLGDNKWLQ TLYDDRQRWV PVYLKDIFFA GMIPVQENES FNAFFDGYVH  300
KHTSFKEFVD KYDLALHRKH MKEAMADQES RNSCFELKTR CSFEVQLSKV YTKEIFKRFQ  360
SEVEGMYSCF NTRQVTARGP IITYIVKERV EVEGNEKEVR NYEVLYETSQ VDIRCICSLF  420
NYKGYLCRHA LNVLNYNGVE EIPSRYILPR WTKDFKCRGV LLHHDFNNVD MYNPIYWYHH  480
LYRRAIPVLE QGAQSQDHYK VALHELEELM NRFNLVEDSR V

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022754127.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	1e-111	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A061GQL8	0.0	A0A061GQL8_THECC; FAR1-related sequence 6 isoform 1
STRING	EOY29441	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-114	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]