PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10849_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 638aa    MW: 70993.2 Da    PI: 7.0024
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10849_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.5e-085575951854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +F++  ++yp+ +e+  LA k gL+ +qV++WF N R +
  Neem_10849_f_3 557 MFQNflHPYPKDAEKHLLAVKSGLSRTQVSNWFINARVR 595
                     5887779******************************88 PP
2BELL87.41.6e-28429498272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     rq++ +kk++Ll+ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ +++t++Al++iS+ +r+L+++i++qi
  Neem_10849_f_3 429 RQAVAAKKTQLLTLLQAVDERYNQCLDEIHTVVSAFHAATELDP-QVHTRFALQTISFLYRNLRERISKQI 498
                     78899***************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.5E-30347496IPR006563POX domain
PfamPF075264.2E-30354495IPR006563POX domain
PROSITE profilePS5007111.11536599IPR001356Homeobox domain
SMARTSM003896.6E-6539603IPR001356Homeobox domain
CDDcd000861.42E-10539600No hitNo description
SuperFamilySSF466893.09E-15540606IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-25542605IPR009057Homeodomain-like
PfamPF059207.8E-15556595IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MALRAPAMNR SFNRENPRIL IVMIAENQVL SDGEKRGTKQ NQKEGEAYGP SKACSSSMDI  60
ASRNSVIIDG IPNSLPGSSS FDFNNQNPAL AGFAPLSALQ GEPISDIQAN VHITNNSRVF  120
DSDEFVTLLR RNAMRDASLG SSCPVDNVDF REQREEGTSI SSTSLATLLA ARSGLQENLD  180
NLAIAVPSIY PLEAFRSHIA NDCSNDLNSS FETSVSCGYD DVLGNVNGKW KFEKSHAPPF  240
GGKTPLRTAF QPYSSIANLH PNGWISSNCA DLTVGDYSYT KYHNELSLSL ATSQTAITGG  300
TNIPDQCSEV GFSGATHHCL NATGLWSEQA SCNSKELSLS FGCHGPAQFS QFMSGSKYLH  360
AIQEILAQIA SYSLENLDDV SYLTGERTGE NTSFSSSFIA GRGRASMNSH EFPNFDGSLE  420
VQRNSSVRRQ AVAAKKTQLL TLLQAVDERY NQCLDEIHTV VSAFHAATEL DPQVHTRFAL  480
QTISFLYRNL RERISKQILA MGAHFDRECS RGKETIFVDS FIEEQWALQQ LKRKEHQVWR  540
PQRGLPEKSV SVLRAWMFQN FLHPYPKDAE KHLLAVKSGL SRTQVSNWFI NARVRLWKPM  600
IEEMYREVNR RKARRNEEGN DSSHSSQISI NNQRFSMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-14545603563Homeobox protein Meis2
4xrm_B2e-14545603563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015385015.10.0homeobox protein ATH1
RefseqXP_015385016.10.0homeobox protein ATH1
RefseqXP_024952981.10.0homeobox protein ATH1
RefseqXP_024952982.10.0homeobox protein ATH1
SwissprotP487311e-116ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A067GMY90.0A0A067GMY9_CITSI; Uncharacterized protein
TrEMBLA0A2H5PZ720.0A0A2H5PZ72_CITUN; Uncharacterized protein
STRINGXP_006475948.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-118homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]