PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10658_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28103.1 Da PI: 7.825 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.1 | 3.2e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rienk nrqvtfskRrng+lKKA+ELS LCdaevaviifss+gkl+e++s Neem_10658_f_1 9 ERIENKVNRQVTFSKRRNGLLKKAYELSLLCDAEVAVIIFSSHGKLFEFAS 59 69***********************************************86 PP | |||||||
2 | K-box | 45.6 | 3.1e-16 | 124 | 180 | 32 | 88 |
K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 + ++ h+lGedL++L +keLq++e+qL++ l R++K++++++q+e+lq+k e + Neem_10658_f_1 124 EINLLHFLGEDLGTLGVKELQKIEKQLDRTLALARQRKTDIMVQQLEKLQQKLIEEE 180 56788***********************************************87755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.847 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.21E-43 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 6.8E-33 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.761 | 86 | 193 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 4.9E-12 | 120 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRGKVVLER IENKVNRQVT FSKRRNGLLK KAYELSLLCD AEVAVIIFSS HGKLFEFASN 60 DVAKILERYR QCCYTSPASY INEQDTEALF PEILRLRATC ESLQRTQRLN FNLSFCELNN 120 HNNEINLLHF LGEDLGTLGV KELQKIEKQL DRTLALARQR KTDIMVQQLE KLQQKLIEEE 180 GQCVEAVREP GTGRSNIDHV RMMNPSPSAP NLQIGYHQFS LEDRASIEAG VSLAAGRFNP 240 NPAQGWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-23 | 1 | 97 | 1 | 91 | MEF2 CHIMERA |
6bz1_B | 1e-23 | 1 | 97 | 1 | 91 | MEF2 CHIMERA |
6bz1_C | 1e-23 | 1 | 97 | 1 | 91 | MEF2 CHIMERA |
6bz1_D | 1e-23 | 1 | 97 | 1 | 91 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006490461.1 | 4e-80 | MADS-box transcription factor 6 | ||||
Swissprot | Q8LLR1 | 2e-65 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0A2H5NMK9 | 9e-79 | A0A2H5NMK9_CITUN; Uncharacterized protein | ||||
STRING | XP_006490461.1 | 2e-79 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM29565 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 9e-50 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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