PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_1063_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | B3 | ||||||||
Protein Properties | Length: 314aa MW: 36154.5 Da PI: 9.292 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.1 | 1.5e-13 | 30 | 115 | 16 | 99 |
EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l + ++e+ + + ++k + l+d gr+W k+ ++ +g v++++W++F++++ L+ gDf++Fk++g+s f vk+f k Neem_1063_f_2 30 LFFDSLLLREYhqllpgiwMDQ--CQKHVFLRDYAGRRWHGKM--ENVDGVLVIKDCWERFAHQHSLEHGDFLIFKYNGSSLF--DVKIFGK 115 5555555555555555554333..7789***************..********************************998877..9999876 PP | |||||||
2 | B3 | 48.3 | 1.8e-15 | 213 | 300 | 12 | 99 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfrk 99 ++ ++++ + +++hg+k + ++l d++g++W vkli+r ++gr+ +tkGW +F k n+L+ gD ++F+++ + ++e++v+v+rk Neem_1063_f_2 213 SRYVMSISVPEVKAHGIK-LK-PNMMLLDQNGEKWPVKLIFR-TDGRIAMTKGWLDFWKNNKLDIGDKCLFEFVlgRGnISKEMKVQVVRK 300 455699999******766.34.48***************765.557899***********************5542334677788888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.86E-15 | 11 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-15 | 12 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.8E-4 | 17 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-10 | 51 | 114 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.45E-9 | 56 | 113 | No hit | No description |
PROSITE profile | PS50863 | 10.983 | 56 | 116 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-19 | 200 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 200 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.18E-14 | 203 | 299 | No hit | No description |
PROSITE profile | PS50863 | 11.885 | 204 | 301 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-12 | 205 | 301 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-13 | 214 | 300 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MVKRSGKITP DDNNCEFFKV YLPAFSSKQL FFDSLLLREY HQLLPGIWMD QCQKHVFLRD 60 YAGRRWHGKM ENVDGVLVIK DCWERFAHQH SLEHGDFLIF KYNGSSLFDV KIFGKNGCRK 120 EETLIANMDT TNVKKEIETE GDQTFDGDDH ACKQEYSKTI LKTSEEIGSP SGASRIKTIK 180 RDATDLGECE AFKAAGYVVP RNPYFMSVLS QYSRYVMSIS VPEVKAHGIK LKPNMMLLDQ 240 NGEKWPVKLI FRTDGRIAMT KGWLDFWKNN KLDIGDKCLF EFVLGRGNIS KEMKVQVVRK 300 GAASANNQRR HLRT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425800.1 | 1e-116 | putative B3 domain-containing protein At5g66980 | ||||
Refseq | XP_006466673.1 | 1e-116 | putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | V4SJL3 | 1e-115 | V4SJL3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006466673.1 | 1e-115 | (Citrus sinensis) | ||||
STRING | XP_006425800.1 | 1e-115 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12802 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 4e-33 | B3 family protein |